Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11817 107 2e-18 seq6424 102 8e-17 seq1348 84.2 2e-11 seq9382 82.4 8e-11 >seq11817 Length=981421 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 476695 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 476754 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 476755 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 476814 Query 23651 CCAC 23654 |||| Sbjct 476815 CCAC 476818 >seq6424 Length=433988 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| || ||||||||||| || || || || || |||||||| Sbjct 17706 AGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 17647 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 17646 ACCACACGT 17638 >seq1348 Length=1120946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 475038 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 475097 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | | ||||||||||| ||| Sbjct 475098 ACGCGCCACCGCGCCCGGC 475116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 475023 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 475082 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| |||||| |||| Sbjct 475083 GCTGGGATTACAGGCACGCGCCACCGCGCC 475112 >seq9382 Length=170881 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/113 (77%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | ||||| || |||| |||||||||||| ||||| Sbjct 76285 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGTGATCCTCCAGCCTCAGCCTCCCGAGTA 76344 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGC--TAATTTTTGTATTTTTA 8497 ||||||||||||||| ||||||||||| ||| || ||||||||||| Sbjct 76345 GCTGGGATTACAGGCGCGCGCCACCACGCCCAGCGGGAA---TTGTATTTTTA 76394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521377014316400