Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6202 123 2e-23 seq15871 120 3e-22 seq7844 120 3e-22 >seq6202 Length=441370 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 4659 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 4600 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || |||||||||||||| || || || | ||| ||||| | Sbjct 4599 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 4540 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 4539 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 4480 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 4479 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4429 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 3278 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 3219 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 3218 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 3159 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 3158 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3099 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 3098 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3061 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 3506 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 3447 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 3446 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 3387 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 3386 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3327 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 3326 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3289 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 3734 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 3675 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 3674 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 3615 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 3614 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3555 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 3554 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3517 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 3962 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 3903 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 3902 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 3843 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 3842 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3783 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 3782 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3745 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 4190 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 4131 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 4130 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 4071 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 4070 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4011 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 4010 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3973 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 4418 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 4359 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | |||| || ||| Sbjct 4358 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 4299 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 4298 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 4238 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4201 >seq15871 Length=707613 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || || Sbjct 26936 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 26995 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 26996 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 27055 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 27056 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 27115 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 27116 CCGGTCAGGGTCTTCACGAAGATCTGCAT 27144 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||| ||||| ||||| || ||||| ||| | || || Sbjct 26708 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCC 26767 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 26768 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 26827 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 26828 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 26887 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 26888 CCAGTCAGGGTCTTCACGAAGATCTGCAT 26916 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| | || || Sbjct 27164 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 27223 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | ||| | || || ||| | | || Sbjct 27224 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGC-CTTCTTTTTCTTG 27282 Query 41774 -ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| | | | ||||| || | ||||||||||| || || ||||| Sbjct 27283 TATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTT 27342 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || |||||||| || |||||||| Sbjct 27343 ACCAGTGAGGGTCTTTACAAAGATCTGCAT 27372 >seq7844 Length=401405 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| || || || || ||||| Sbjct 263127 AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 263068 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 263067 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 263008 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 263007 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 262948 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| || ||||| || Sbjct 262947 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 262907 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 263368 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 263309 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || |||||||||||||| || || || | ||| ||||| | Sbjct 263308 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 263249 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| || ||||| ||| ||| || ||||| | | ||||| || | ||| Sbjct 263248 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 263189 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 263188 CACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 263138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462205610151200