Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8465 289 2e-73 seq30230 233 1e-56 seq39767 168 5e-37 seq10478 129 4e-25 seq53514 125 5e-24 seq1170 98.7 7e-16 seq2560 82.4 5e-11 >seq8465 Length=90450 Score = 289 bits (320), Expect = 2e-73 Identities = 330/441 (75%), Gaps = 9/441 (2%) Strand=Plus/Minus Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATT 4028 ||||| | | || || ||||||||||||||||||||||| |||||| || || ||| Sbjct 38001 TTAATTACTTTTTTCTTATACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGACA-- 37944 Query 4029 AGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAA 4088 ||| |||||| |||| ||||| | |||||| || || || | |||| |||| |||| Sbjct 37943 -GAAGGAACACCTGGAGATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAA 37885 Query 4089 AAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148 ||| || |||| |||||| ||||||||||| | | |||||| ||| |||||| || ||| Sbjct 37884 AAATGTATCACTTTCAAATTCTTGCATGATTTTTGCCACAAATAGTCTAAGATGGCCTGG 37825 Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 | |||| ||||| ||||| | ||||| ||| ||| || ||| |||||| ||| Sbjct 37824 CTTGTTCATGGCTTCCTTATATA--GAACTGTTTCCTGCTATTCAAACCGTGTCTAGTTT 37767 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 || ||| |||| || | |||||| ||| ||||||| | ||| || || | ||| Sbjct 37766 GTT----AATGCTGGTTGCATGATAAGTTCTAAGGCATCATACAGACTTTTGGCAAGAAA 37711 Query 4269 ATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328 |||||||| | |||| | ||||| ||||| | |||||| | |||||||||| |||| Sbjct 37710 ATGAGCTCCCTATGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTGTCTTT 37651 Query 4329 TAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATT 4388 ||||| |||||||| |||| |||||| ||||| ||||||||||||| ||||| Sbjct 37650 TAAAGATTTATTCTTCTCTAGAATGTTGAACCATGTCTTCCTACCCATAATCACCAAATT 37591 Query 4389 CTGTTTATCTGGTACAGAAGA 4409 |||||||||| ||| ||||| Sbjct 37590 CTGTTTATCTTCTACTGAAGA 37570 >seq30230 Length=201725 Score = 233 bits (258), Expect = 1e-56 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 197922 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 197863 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| ||| || |||||||||| | |||||| ||||| || | ||||| |||||||| Sbjct 197862 CAGAAGGAATACCTGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGAA 197803 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| ||||||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 197802 AAAACGTGTCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 197743 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 197742 GCTTGTTTATGGATTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 197683 Query 4208 TATT 4211 |||| Sbjct 197682 TATT 197679 >seq39767 Length=122155 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 64549 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 64490 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 64489 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGTAGGACCAG 64430 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 64429 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 64370 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 64369 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 64310 Query 27167 ATTGCG 27172 |||||| Sbjct 64309 ATTGCG 64304 >seq10478 Length=5452 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 3862 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 3921 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 3922 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGA 3981 Query 4285 AGCTCC 4290 | ||| Sbjct 3982 GGTTCC 3987 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 724 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 783 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| || ||| || ||| | |||| ||||| || | | ||| Sbjct 784 GATCCTTGTCACAAATAGTCTATGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 843 Query 4176 AC 4177 || Sbjct 844 AC 845 >seq53514 Length=2034 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 677 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 736 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 737 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 785 >seq1170 Length=23136 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 16508 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 16567 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | ||| || ||| | |||| ||||| || | | ||| Sbjct 16568 GATCCTTGTCACAAATAGTCTTTGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 16627 Query 4176 AC 4177 || Sbjct 16628 AC 16629 >seq2560 Length=892758 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 720120 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTT 720061 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || |||||| | || || || ||| || || || || ||||| |||||||||| Sbjct 720060 CAGCTCTGTTGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAA 720001 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 720000 TTTTCACTCC 719991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357565310994929