Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq39760 140 4e-28 seq27981 123 3e-23 seq2343 102 1e-16 seq2112 98.7 1e-15 >seq39760 Length=42403 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 28007 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28066 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 28067 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 28126 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 28127 CTGTTTCTTATACCATA 28143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 32501 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 32560 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 32561 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 32620 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 32621 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 32680 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 32681 GTTTATTCGA 32690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 38915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 38974 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 38975 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 39034 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 39035 AGGCTCCAGGTAAAT 39049 >seq27981 Length=93525 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 21161 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 21220 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 21221 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 21280 Query 24277 C 24277 | Sbjct 21281 C 21281 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 23209 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 24352 >seq2343 Length=226264 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| ||||| || || || | Sbjct 8934 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGA 8993 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 8994 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 9053 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 9054 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 9099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||| | ||| | || | || || ||||| || | || ||||| || || |||||| Sbjct 4620 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 4679 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || ||||||||||| || ||||| || || ||||| | || ||||| || |||||| Sbjct 4680 CACTTTTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATT 4739 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || || | || | ||| |||||||| || ||||||||| Sbjct 4740 CCCACAGATACCCTCATCAACATGTGTTGTGGTCTTTCA 4778 >seq2112 Length=273871 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 175588 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 175529 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 175528 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 175470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 166078 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 166019 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 166018 TACTGGATTGGAAAGATGACAAATC 165994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || || || || |||||| Sbjct 171051 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 170992 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 || || || |||| | | || || ||||| | | | ||| || |||| ||| || Sbjct 170991 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 170936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587508459307920