Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14681 286 4e-72 seq18406 111 2e-19 seq13663 109 7e-19 >seq14681 Length=866001 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| | ||| | | | | |||| | ||||| |||||||||||||| Sbjct 716563 AGCAGGGTTTCTATGTCAGACTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 716504 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 716503 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 716444 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| ||| Sbjct 716443 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTA 716384 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || ||||||||||||||||| || ||| | | || || ||| Sbjct 716383 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGGTGCGCCTTCTCGCCATTCACC 716324 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| ||||| ||||| || ||| || || ||||||| |||| Sbjct 716323 TCGCACTTTTCGAAGAGCATGAAGTTGGGCTCAAACCCGCCGCCTGGTCGGACGTACTTC 716264 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 716263 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 716226 Score = 163 bits (180), Expect = 3e-35 Identities = 163/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| |||| ||||| | ||| |||| Sbjct 715965 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAAGCCCCGGGGTCCGAGGC 715906 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 715905 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGTGATGCTA 715846 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCT-CACAGGTTCTCCTCCG 83569 ||||||| ||||||| ||| |||||| ||| || | |||| | || || || ||| Sbjct 715845 CGTTCTCAATGAGCAGCACCTTGCCCCGCAAGGAGGC-CAGCTGGAAGGGCTCCCCGCCG 715787 Query 83570 GTAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | ||||| || ||||| |||||||| Sbjct 715786 GCCAGAGGGCGCGCGGAGAAAGCGTACAC 715758 >seq18406 Length=102614 Score = 111 bits (122), Expect = 2e-19 Identities = 164/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| |||| || | |||||||| | | |||||||| | ||||| ||||||||| Sbjct 71374 GGGGAAGCGGGGCTTCTGTATCGGGCTCGATGTCCAGGGTCAGAAAGCGGCGGCTGTACC 71315 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCG 83170 |||||| |||| | ||| | ||||||| || |||| | |||| | | ||| | ||| Sbjct 71314 TGCGCAAGGGCCCACTGTCCGGGCCCACCAGGAGCTTCCCTGAAGCTGCGGGCGAAGTCC 71255 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCG 83230 ||| |||||| ||| |||||| |||| | ||| || ||||||| | | | || Sbjct 71254 CTGCTGCACACGGGACACCAGGGGATGAACCTGGGATCCTTCACGAGGGCCGTGGCGGCG 71195 Query 83231 TCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC 83281 | || ||| |||||||||| | ||| ||| |||||| | || ||| Sbjct 71194 CCACTGGGCATGCGCAGGGCCTCGCCAAGGCCGGCAAAGAGCCGGTGCGCC 71144 >seq13663 Length=380242 Score = 109 bits (120), Expect = 7e-19 Identities = 203/288 (70%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || ||| ||| Sbjct 129737 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATTGGCAACTTTGCCTCGCGCCTGC 129679 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 129678 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 129619 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| || | | |||| ||||| Sbjct 129618 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTTCCCGTATCAAGCTCATCCGCCACTAC 129560 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 129559 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 129501 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 129500 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 129455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602425901297160