Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7597 100 2e-16 seq10000 98.7 6e-16 >seq7597 Length=568930 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| ||||||||||||||||| || | || Sbjct 230075 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 230016 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| ||| | || ||||||||| Sbjct 230015 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 229956 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 229955 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 229896 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| | || ||||| |||||||||||| Sbjct 229895 TTACCGGTCAAGGTCTTCACGAAGATCTGCATC 229863 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | |||| |||||||| ||||||||||| ||||| || | || Sbjct 230304 CAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 230245 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| ||| | || ||||||||| Sbjct 230244 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 230185 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 230184 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 230125 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| | || ||||| |||||||||||| Sbjct 230124 CTTACCGGTCAAGGTCTTCACGAAGATCTGCATC 230091 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| ||||||||||| ||||| || | || Sbjct 229847 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 229788 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| |||||||| || || | || ||||||||| || | || || || || Sbjct 229787 TCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCT 229728 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| ||||||||| Sbjct 229727 TGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTT 229668 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || ||||| |||||||||||||| Sbjct 229667 TTACCAGTTAGGGTTTTTACAAAGATCTGCAT 229636 >seq10000 Length=929206 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 685735 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 685676 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 685675 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 685616 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 685615 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 685556 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||| ||||| Sbjct 685555 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 685524 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 685963 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 685904 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 685903 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 685844 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 685843 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 685784 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 685783 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 685752 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 686191 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 686132 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 686131 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 686072 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 686071 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 686012 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 686011 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 685980 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 686419 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 686360 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 686359 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 686300 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 686299 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 686240 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 686239 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686208 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 686647 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 686588 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 686587 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 686528 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 686527 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 686468 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 686467 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686436 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 686875 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 686816 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 686815 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 686756 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 686755 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 686696 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 686695 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686664 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 687103 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 687044 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 687043 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 686984 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 686983 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 686924 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 686923 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686892 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 687331 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 687272 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 687271 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 687212 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 687211 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 687152 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 687151 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 687120 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 687559 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 687500 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||||||||||||| ||| | || ||||| || Sbjct 687499 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 687440 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 687439 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 687380 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 687379 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 687348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 319775657918240