Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq9859 2419 0.0 seq41849 107 1e-18 >seq9859 Length=187512 Score = 2419 bits (2682), Expect = 0.0 Identities = 1560/1710 (91%), Gaps = 32/1710 (2%) Strand=Plus/Minus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| Sbjct 62129 GTCCTAACTCCAGTCCCAGCATGTTCAGCTGGGTTGCAGCATCAGGTTACAGATCTCCAT 62070 Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 | ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 62069 CTACAAGGGTCCTAGGCAGGACTTGACTGAGGATATTTGTCTAGAGAAGAAATCTATCTT 62010 Query 107191 TACCATCACTCTGGAGTTGAACTTGATGTTC--------TG-----GATTAGTTTGTAAT 107237 | ||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 62009 TGCCATCACTCTGGAGTTGAACTTGATGTTCCTTGAGGATGTTCCAGATTAATTTGTAAC 61950 Query 107238 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTC 107297 | |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| Sbjct 61949 TGAAGGCATTTTGTTCTGTCCAAGGACCTCCTCCTCCGCCTTCTCTGTGCCCAAACTCTA 61890 Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357 | |||||||||||||||||||||| |||||||||| |||||||| ||||| || |||||| Sbjct 61889 CCGATCTCCCATCCCATGAAGATGACTGGGTGGAAAAAGAAGCTCTGCCGCGGGCATCAT 61830 Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct 61829 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTCTCAGG 61770 Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477 || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 61769 TTGAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAAAGTCAGCGCTGT 61710 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 61709 AGGGACATCTTGTACAAGAACCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 61650 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 ||||| |||||||||| |||||| ||||||||||| ||||| |||||||||||||| ||| Sbjct 61649 ATCACACGAGGGGACCGGGAAGCGGTGGTCCAGGCTCTCCTGGACAACCTGGAAGTCAAG 61590 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || |||||| |||| |||||| |||| ||||||||||||| ||||||||||||||||| Sbjct 61589 AAGAAGCGGCTGCCTTTCACTGACACCAATTACCTCAACATGACCAGAGACTGTGAGCGA 61530 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717 || |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 61529 TTTAAGGCCCAGAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCCC 61470 Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61469 ATTGCATACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCT 61410 Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837 |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 61409 GTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTTT 61350 Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61349 AAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 61290 Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61289 GTTCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGAC 61230 Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 61229 TTGCTCCAGAGCTTGGTGCCATGGAAATACTTACTGAATACATGTGGGACAGACTTCCCC 61170 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 61169 ATAAAGACCAACGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATG 61110 Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137 ||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 61109 GAGTCTGAGATACCTTCTGAGTACAAAAAAACCCGCTGGAAATACCGCTACGAGGTGACA 61050 Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197 |||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 61049 GACAGACTGTACCTAACCAGCAAGATGAAGGACCCTCCTCCTGATAATTTACCTATGTTC 60990 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 60989 ACGGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCCC 60930 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 ||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 60929 AAATCCCAAAGGCTGATTGAATGGGCCAAAGACACCTATAGCCCCGATGAACACCTCTGG 60870 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 ||||||||||||||||| || |||||||||||||||||||| |||| ||||||||||| Sbjct 60869 GCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACTCCAAGTATCAC 60810 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 60809 ATTTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAAGGCCACGAGGGAGATGTT 60750 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 ||||||||||| ||||| ||||| |||||||||||||||| | ||||||||||||||||| Sbjct 60749 AGCATGGGGGCACCTTACGCACCTTGCTCTGGAATCCATCAGCGGGCCATCTGCATTTAC 60690 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60689 GGAGCCGGGGACTTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 60630 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617 || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 60629 CCAAGGGTGGATGATAACGTCCTGCAGTGTTTAGAAGAGTATTTACGTCATAAGGCCATC 60570 Query 108618 TATGGGACTGAACTTTGAGCTGCACTGT------------------GGGCCAGGGAC-TG 108658 |||||||||||||||||||||| ||||| ||||||||||| || Sbjct 60569 TATGGGACTGAACTTTGAGCTGTACTGTGGGCAGATTGCTACCCGAGGGCCAGGGACATG 60510 Query 108659 TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 |||||||| ||||||||| | ||||| |||||||||||||||| |||||||||||| || Sbjct 60509 TGCCAACACGCCCAGGGCATGCTGGTTCTGTGTGGGGTGGGGGGTGAGGGCTGTGGACTC 60450 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||||||||||||||||| ||||| Sbjct 60449 CATGGCATCCCCCAGGGTCAGAGGCCTGCT 60420 >seq41849 Length=83634 Score = 107 bits (118), Expect = 1e-18 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 108767 TGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCACATATGAGAGTGTTGG 108826 ||||||||||||| | | |||||||||| ||| ||||||| |||||||| ||||||| Sbjct 56259 TGGCTCCAGGAGATGTCCGTTCACCCATTTCTTCAGGAGCTCGGCATATGAGTGTGTTGG 56318 Query 108827 GTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863 ||| |||||||||||| || ||| |||||||||||| Sbjct 56319 GTATGGTGATGTTTGGCCCTTAATCAACTTCTCTAAC 56355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344715371967846