Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7597 122 7e-23 seq10000 111 1e-19 seq25612 95.1 9e-15 >seq7597 Length=568930 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||| ||||| |||||||||||| | Sbjct 230090 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 230031 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| || || Sbjct 230030 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 229971 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 229970 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 229911 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || |||| |||||||| ||||| ||||| Sbjct 229910 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 229864 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| || ||| ||||| ||||||||||| | Sbjct 230318 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 230259 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| || || Sbjct 230258 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 230199 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 230198 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 230139 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || |||| |||||||| ||||| ||||| Sbjct 230138 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 230092 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| | Sbjct 229862 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 229803 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || ||||||| ||| ||||| ||||| Sbjct 229802 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 229743 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || || || ||| || | | | | |||| | | ||||||| Sbjct 229742 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 229683 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || || || || |||||||| ||||| Sbjct 229682 TCCAGAGTGATGGTTTTACCAGTTAGGGTTTTTACAAAGATCTGCAT 229636 >seq10000 Length=929206 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 685750 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 685691 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 685690 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 685631 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 685630 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 685571 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 685570 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 685520 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 687575 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 687516 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 687515 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGG 687456 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| || || ||| || | | | | |||| | |||||| Sbjct 687455 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 687396 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 687395 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 687348 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 685978 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 685919 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 685918 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 685859 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 685858 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 685799 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 685798 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 685752 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 686206 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 686147 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 686146 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 686087 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 686086 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 686027 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 686026 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 685980 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 686434 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 686375 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 686374 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 686315 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 686314 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 686255 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 686254 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686208 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 686662 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 686603 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 686602 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 686543 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 686542 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 686483 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 686482 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686436 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 686890 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 686831 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 686830 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 686771 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 686770 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 686711 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 686710 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 687118 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 687059 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 687058 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 686999 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 686998 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 686939 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 686938 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 686892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 687346 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 687287 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | |||||| ||||| || || Sbjct 687286 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 687227 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | | |||| | ||||||| Sbjct 687226 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 687167 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 687166 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 687120 >seq25612 Length=49760 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-- 45166 |||||||| || | | |||| |||||| ||| ||| ||||| || |||||||| Sbjct 25106 GCCACCTCGCAGACGAAGCACCATGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 25047 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | ||| || | | ||||| ||| | || ||||| |||| |||||| |||| || Sbjct 25046 TGGAGT--GCAGCCATTCTCCAGCTGTGTGCCTGCGAAAATCAGACGCTGTCGGTCAGGC 24989 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||||||||| ||||| ||| || | | | |||| | ||| Sbjct 24988 GGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCG 24929 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| | |||||| ||||||||| |||| || |||||||||| ||||| Sbjct 24928 ACCTCAAGGGTAATGGTCTTGCCCATCAGGATCGTCACAAAGATCTGCAT 24879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391044200695759