Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq27981 105 6e-18 >seq27981 Length=93525 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 21161 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 21220 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||| ||||| | Sbjct 21221 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 21280 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 21281 CTACCACACGTTCTCC 21296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || || Sbjct 19590 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19649 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| |||||||||||||| |||||||||||| Sbjct 19650 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 19685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 23110 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 23169 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 || ||||| ||||| | ||||| Sbjct 23170 GAAGCCATAGAAACAACGGGCTTC 23193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | |||||||||||||| |||||||||||||| || || || Sbjct 24253 AATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 24312 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 || ||||| ||||| | ||||| Sbjct 24313 GAAGCCATAGAAACAACGGGCTTC 24336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477297979911720