Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6206 172 7e-38 seq39760 134 2e-26 seq27981 114 2e-20 seq66165 107 2e-18 seq14263 107 2e-18 seq2343 102 1e-16 seq2112 93.3 5e-14 >seq6206 Length=202072 Score = 172 bits (190), Expect = 7e-38 Identities = 205/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||| || |||||||| |||||||||| |||||| | || | Sbjct 105134 GGATCTTTGGGTCTGATTTTAGCCATGACTTTAAACAGACATAAGCATCCCTTTAACCCA 105075 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 ||||| |||| || ||||| |||||| ||| |||| || |||||| ||||||||||| Sbjct 105074 TACCTGCTTTTTGTATTTATACTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 105015 Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557 | ||||| ||| || | |||| ||| || |||| |||||||||| || | Sbjct 105014 TGTGATGTATATATTGTCCTGCAAGATTTTATACTGACCCATGCAGTGTTTTCTGATTCA 104955 Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617 ||| | ||| |||| ||| |||||||||| ||| || ||| | |||| |||| || Sbjct 104954 ACTGTGTATACCCTACCATCTAAGAGAGATTACAGCAAGTTTGGAGCAGGCCCGTTTTCT 104895 Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655 | ||| |||||||| ||||||||| |||||| ||| Sbjct 104894 GATTTGTGGATTTTGTGCTTGTCAGGAATCTTGAAGAT 104857 >seq39760 Length=42403 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 28007 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28066 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 28067 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 28126 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 28127 CTGTTTCTTATACCATA 28143 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 32501 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 32560 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | || || || || || ||||| || | Sbjct 32561 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 32620 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 32621 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 32680 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 32681 GTTTATTCGA 32690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || || || || | | Sbjct 38915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 38974 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 38975 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 39034 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 39035 AGGCTCCAGGTAAATAGC 39052 >seq27981 Length=93525 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 21161 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 21220 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||| ||||| ||||||| Sbjct 21221 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 21280 Query 33724 C 33724 | Sbjct 21281 C 21281 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || ||||||||||| |||||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 23209 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || ||||||||||| |||||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 24352 >seq66165 Length=3901 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | || | ||||||||||| |||||| |||||| ||| Sbjct 574 GTTACTTTCTATGATGTATATGTTGTCCTGCAAGCTTTCATATTGACTTGTGCAGTATTT 515 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | |||| Sbjct 514 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 456 >seq14263 Length=96942 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | || | ||||||||||| |||||| |||||| ||| Sbjct 74322 GTTACTTTCTATGATGTATATGTTGTCCTGCAAGCTTTCATATTGACTTGTGCAGTATTT 74263 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | |||| Sbjct 74262 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 74204 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 85253 TGCTCTTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 85194 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 85193 ATCCGAATGG 85184 >seq2343 Length=226264 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| | ||| | || | || || ||||| || | || ||||| || || |||||| Sbjct 4620 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 4679 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 || ||||||||||| || ||||| || |||||||| | || ||||| || |||||| Sbjct 4680 CACTTTTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATT 4739 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || || | || | ||| |||||||| || ||||||||| Sbjct 4740 CCCACAGATACCCTCATCAACATGTGTTGTGGTCTTTCA 4778 >seq2112 Length=273871 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 175588 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 175529 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 175528 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 175470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || || || |||||| Sbjct 171051 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 170992 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || || || |||| | | || || ||||| | | | ||| || |||| ||| || Sbjct 170991 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 170936 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 166078 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 166019 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 166018 TACTGGATTGGAAAGATGACAAATC 165994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623226724143120