Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq27981 120 3e-22 seq2112 114 1e-20 seq39760 96.9 3e-15 seq2343 86.0 6e-12 >seq27981 Length=93525 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| ||||| || | || ||||||| ||||||||| || Sbjct 21163 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 21222 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 21223 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 21282 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 21283 ACCACACGTTCTCC 21296 >seq2112 Length=273871 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 175590 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 175531 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 175530 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 175471 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 175470 CCACCACCCTTTCCCC 175455 >seq39760 Length=42403 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 28007 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28066 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 28067 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 28126 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 28127 CTGTTTCTTATACCAT 28142 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||| Sbjct 25800 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 25859 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980 ||| || || |||||||| || || |||||||| |||||||||| ||| | ||| Sbjct 25860 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCA--TCTTGAGTACGGT 25917 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010 ||| ||||| || ||||| || || ||||| Sbjct 25918 TTTCTGAGAGATTTCCCACACGGTCTTATA 25947 >seq2343 Length=226264 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| ||||| || | | || Sbjct 4641 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTTTCAGAAAGAAGGTTG 4700 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 4701 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 4760 Query 38533 ATATGTTGTGGTCTTTC 38549 || |||||||||||||| Sbjct 4761 ATGTGTTGTGGTCTTTC 4777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463621810955760