Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6206 210 3e-49 seq14263 192 8e-44 seq39760 140 4e-28 seq66165 138 1e-27 seq27981 123 3e-23 seq2343 102 1e-16 seq2112 98.7 1e-15 >seq6206 Length=202072 Score = 210 bits (232), Expect = 3e-49 Identities = 236/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || ||| | || ||||||||||| | | || ||| |||| | ||||||||| Sbjct 104817 AGAAGCCAAGACTAACTTCACTGTTTCACCATAAAAAATCATCTTCAAGATTCCTGACAA 104876 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 |||||||||||| | |||| |||||||||| || ||| |||||||||| || Sbjct 104877 GCACAAAATCCACAAATCAGAAAACGGGCCTGCTCCAAACTTGCTGTAATCTCTCTTAGA 104936 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 | |||| ||||| |||| | || |||||||||| ||||| || ||| |||||| Sbjct 104937 TGGTAGGGTATACACAGTTGAATCAGAAAACACTGCATGGGTCAGTATAAAATCTTGCAG 104996 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGT 9631 || | || |||||| |||||||||||| |||||| || |||| |||| ||||| | Sbjct 104997 GACAATATATACATCACAGAAAGTAACAATGAAGGCCACAGTCAGAGCTTCCAACAGTAT 105056 Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 |||| || ||||||||||| || | |||||| |||||||||| |||||||| || || Sbjct 105057 AAATACAAAAAGCAGGTATGGGTTAAAGGGATGCTTATGTCTGTTTAAAGTCATGGCTAA 105116 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 105117 AATCAGACCCAAAGAT 105132 Score = 120 bits (132), Expect = 4e-22 Identities = 131/170 (77%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||||| |||| | ||||||||| || || || || || || || |||| ||||||||| Sbjct 104424 TTTCT-ATTAATTGCTTCCAAAACTTGCAA-AGGTGTAA-AAGAGGTTGAGGATATCCAA 104480 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||||| ||||| ||||| ||||| |||| ||| || ||| ||| || ||||| || Sbjct 104481 GTAGAGGCCGATAGCAGCTAATACATACTCTTTAGGTGACAGCCTATACATCAGTGATTG 104540 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACA 9399 ||||||||||| ||||||| |||||| | |||||| || | ||||| || Sbjct 104541 TGTGTCATAGATGATGAATCTGCAGAAAAGAAGGGCTCCTACAGCAGCCA 104590 >seq14263 Length=96942 Score = 192 bits (212), Expect = 8e-44 Identities = 157/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| |||||||||||||||||| Sbjct 71422 TTTTTATTAACTGCTTCCAAAACCCGCAACAGGTGCAAGAAGAGATTGATGATATCCAAG 71481 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||||||||| |||||||| || ||| | || || |||||||| Sbjct 71482 TAGAGGTTGATGGCAGCTAACACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 71541 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || |||| || ||||| |||| Sbjct 71542 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCCCGGCAGCCAAGACCAACTCC 71601 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 71602 ACTGTCTCACT 71612 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 74204 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 74263 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| ||||| ||||||||||||| || |||| ||||||||||||||||| Sbjct 74264 AATACTGCACAAGTCAATATGAAAGCTTGCAGGACAACATATACATCATAGAAAGTAAC 74322 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 85184 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 85243 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||| ||||| | ||||||| Sbjct 85244 TGGAAGAGCAGGGGTAGAGG 85263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| ||||||||||||| || |||||||| |||||||||| || |||||| || || Sbjct 78413 AAATCCAAAAAGCAGGTATAAGTTAAGGGGATGCTTATGTCTGTTTACAGTCAAGGCTAA 78472 Query 9692 AATCAAGCCTATAGAT 9707 |||||| || | |||| Sbjct 78473 AATCAAACCCAAAGAT 78488 >seq39760 Length=42403 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 28007 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28066 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 28067 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 28126 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 28127 CTGTTTCTTATACCATA 28143 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 32501 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 32560 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 32561 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 32620 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 32621 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 32680 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 32681 GTTTATTCGA 32690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 38915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 38974 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 38975 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 39034 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 39035 AGGCTCCAGGTAAATAGC 39052 >seq66165 Length=3901 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 456 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 515 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| ||||| ||||||||||||| || |||| ||||||||||||||||| Sbjct 516 AATACTGCACAAGTCAATATGAAAGCTTGCAGGACAACATATACATCATAGAAAGTAAC 574 >seq27981 Length=93525 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 21161 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 21220 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 21221 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 21280 Query 36300 C 36300 | Sbjct 21281 C 21281 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 23209 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 24352 >seq2343 Length=226264 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||| | ||| | || | || || ||||| || | || ||||| || || |||||| Sbjct 4620 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 4679 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || ||||||||||| || ||||| || |||||||| | || ||||| || |||||| Sbjct 4680 CACTTTTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATT 4739 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || || | || | ||| |||||||| || ||||||||| Sbjct 4740 CCCACAGATACCCTCATCAACATGTGTTGTGGTCTTTCA 4778 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| ||||| || || | | Sbjct 8934 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGA 8993 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 8994 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 9053 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 9054 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 9099 >seq2112 Length=273871 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 175588 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 175529 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 175528 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 175470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 166078 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 166019 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || |||||||| || ||||||| Sbjct 166018 TACTGGATTGGAAAGATGACAAATC 165994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651285194418360