Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq27981 89.7 4e-13 seq2112 82.4 5e-11 >seq27981 Length=93525 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || |||||| || | |||||||| || ||||| | ||||||||||| Sbjct 21281 GCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 21222 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | |||||||||| || | |||||| | ||||| Sbjct 21221 AAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGACGA 21163 >seq2112 Length=273871 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||||||||| | | || || || || ||||| || |||||||||| Sbjct 175468 TGGCCTTTGCTGCTGTTGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGGC 175527 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||| | |||||||| || | | |||||||| ||| | || ||| | || | Sbjct 175528 TAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGCAGAGATG 175587 Query 22868 AAG 22870 ||| Sbjct 175588 AAG 175590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352598906165137