Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9815 100 2e-16 seq7597 93.3 3e-14 >seq9815 Length=175929 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||||||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 59824 CCACCACGAAGTCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 59765 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||| ||| ||||| ||||| |||| || || || || | || Sbjct 59764 AAAGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 59705 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||| || | |||||| Sbjct 59704 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACC 59645 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || || ||||| ||||| ||||| || Sbjct 59644 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 59595 >seq7597 Length=568930 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| || | |||| ||| || || | ||||| || |||| || || | || ||| Sbjct 229844 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 229785 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||| ||||| | ||| || || | || | ||||||||||| | Sbjct 229784 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGG 229725 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | | ||||| | | | ||||| | || ||| || || | || || ||||| Sbjct 229724 ATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTA 229665 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || ||||| ||||| ||||| || |||||| ||| Sbjct 229664 CCAGTTAGGGTTTTTACAAAGATCTGCATTGTCT 229631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377478440564382