Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9815 113 3e-20 seq5931 98.7 7e-16 seq2775 96.9 2e-15 seq7597 91.5 1e-13 >seq9815 Length=175929 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||| |||| |||||| ||||| || ||||| |||||||| || Sbjct 59824 CCACCACGAAGTCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 59765 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | ||||| | ||| |||||||| | |||| | ||| ||||| ||| Sbjct 59764 AAAGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 59705 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| ||||||| ||||||| ||||| || || Sbjct 59704 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACC 59645 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || ||||| || || || ||||| ||||| || Sbjct 59644 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 59595 >seq5931 Length=560455 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 199273 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTA---GCAG 199329 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || || | ||||| | ||| |||||||| | |||| | ||| |||| | Sbjct 199330 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAG 199389 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| || || || ||| ||||||| ||||||| ||||| || | Sbjct 199390 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCA 199449 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || |||||||| || || |||||||| ||||| || Sbjct 199450 CCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATCTT 199501 >seq2775 Length=875267 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 378419 GCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 378360 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | ||||| | ||| |||| ||| | |||| | ||| ||||| || Sbjct 378359 CAAAGTACGTCCATCTTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 378300 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || | || ||| ||||||| ||||||||||||| | || Sbjct 378299 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGAC 378240 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 378239 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 378189 >seq7597 Length=568930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| || || | | | | ||||| | ||| Sbjct 229838 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 229779 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | ||||| | || ||||| || || |||||||| || || || Sbjct 229778 TTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTC 229719 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| | || ||||| || ||| || || || | || ||||||||||| || Sbjct 229718 CCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTT 229659 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 229658 AGGGTTTTTACAAAGATCTGCAT 229636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358483842500439