Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9815 93.3 3e-14 >seq9815 Length=175929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||||||||| | ||| || ||| ||| |||||||| || || || || |||| | Sbjct 59813 TCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCC 59754 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||| ||| || || ||||| |||| | ||||||||| |||| | |||||||| Sbjct 59753 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTT 59694 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| || || || || | | | ||||| | |||||| || |||| || || Sbjct 59693 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGAT 59634 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || | |||||||| || || ||||| Sbjct 59633 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 59598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351157761906492