Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_005091.2 Length=57455 Score E Sequences producing significant alignments: (Bits) Value seq836623 150 7e-32 >seq836623 Length=4079 Score = 150 bits (166), Expect = 7e-32 Identities = 320/477 (67%), Gaps = 27/477 (6%) Strand=Plus/Minus Query 27384 GTCGTAGTCCGAGCGGATCAGACGCAGCGTCAGCTTCGCGGTC---TTGCGGTCGAAGTA 27440 |||||||||| ||||||| ||||| | ||| || | ||| |||| | || || Sbjct 492 GTCGTAGTCCTTCCGGATCAACCGCAGGGACAGTTTGCCCGTCACTTTGCTGACG---TA 436 Query 27441 GATGGCCCCGCCGATGTGATTGAGAACCTGCTGCACGAACGCATCGAGGTCGTCCTGTCG 27500 || || ||||| ||||| | ||| | |||||| ||||| ||||| |||||| || Sbjct 435 CATCGCACCGCCAATGTGGTCGAGGATAAGCTGCATGAACGATTCGAGCGTGTCCTGACG 376 Query 27501 GTTCCACCGAATGCAGAGGCCGAAACACTCCGAGCAGAGCTTGTTGGCTGCGTCGGTGAA 27560 |||||| || ||||| |||||||| ||| | || ||| ||||||| | ||| Sbjct 375 GTTCCATCGGATGCAAAGGCCGAAGTTCTCGTTAAACAGGGTGTCGGCTGCGAGGCGGAA 316 Query 27561 GGACTGTTCGTCAATCAGCTCACGCGGAAACCCCCTGCCCCATTCGCGGTTCGTCGCGCA 27620 | | ||||| || || || |||| | || | |||||| ||| ||||| | ||| Sbjct 315 CGTCGTATCGTCGATAAGGTCGCGCGACAGACCACGGCCCCACTCGTAGTTCGACTGGCA 256 Query 27621 TTCATAGATGATGTGCGCCGGGTTCATCGCCTTGAT---GGTCTGGTT--------CGCC 27669 ||| || | |||||||||||||||||| || | ||| | ||| || || | Sbjct 255 TTCGTACAGGATGTGCGCCGGGTTCATGGCATGGATTTCGTGCTGATTGCCCTGACCGTC 196 Query 27670 AT----CTGGATCGTCGCC------TTCTCCGGATAGAAGACCGGGCCGTCCCATCCTTG 27719 | ||| ||| | || || |||||||| |||| ||| ||| || Sbjct 195 GTACCCCTGCATCTTGACCAGACATTTTTCCGGATACCAGACGCCGCCAGTCCACCCGGC 136 Query 27720 AATCGATCGACGCACGCGGAACTTCCACGCCTTCGGATACGGGTTCATCGCGCAGATGAG 27779 | || || || | ||| |||||| |||||| || |||||||| |||||||| || Sbjct 135 CGTAGAGCGGCGGGCCTTGAATTTCCACTGCTTCGGGTATGGGTTCATGGCGCAGATCAG 76 Query 27780 GCCGTCGAAAAACACCGTGAAGACGCCCCGGAACGCCGGCACGATTCCGCCGAGCAT 27836 |||||||||| || | || | ||| || ||||| ||||| | || |||||||| Sbjct 75 GCCGTCGAAATACGCGGTAACGACACCACGGAATTCCGGCTGGCGGCCACCGAGCAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181907804347566