Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9815 163 6e-35 seq7597 161 2e-34 seq2775 150 4e-31 seq5931 138 3e-27 seq308 120 7e-22 seq6385 118 2e-21 seq12619 111 4e-19 seq2112 111 4e-19 seq23701 104 5e-17 seq31526 100 6e-16 seq73548 89.7 1e-12 seq28705 89.7 1e-12 >seq9815 Length=175929 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 59806 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTCC 59747 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| ||||||||||||||||| Sbjct 59746 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGG 59687 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 59686 ATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGATGGTCTTC 59627 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 59626 CCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 59594 >seq7597 Length=568930 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || |||||| Sbjct 229865 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 229806 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || | |||||| || || ||| Sbjct 229805 GACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGA 229746 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| | || ||||| || | ||| || ||||| || Sbjct 229745 GGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCC 229686 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 ||||| || || || || |||||||| || ||||||||||| ||||||||| | ||| Sbjct 229685 ACCTCCAGAGTGATGGTTTTACCAGTTAGGGTTTTTACAAAGATCTGCATTGTCTGT 229629 >seq2775 Length=875267 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 378400 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 378341 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || | |||||| || || || || || |||||||| |||||||| |||| ||| Sbjct 378340 AGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATTCTGG 378281 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| |||||| || | ||||| || || || ||||| Sbjct 378280 ATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTC 378221 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| |||||||| ||| Sbjct 378220 CCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 378188 >seq5931 Length=560455 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || ||| |||| | ||| | || ||||| Sbjct 199291 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAG-CAGACAAAGTACGTCCATCTTCC 199349 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||| || || || | || || | || ||| |||||||| |||||||| Sbjct 199350 AGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAGGAATTCCTTCCTTATCCTGG 199409 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 199410 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCACCTCAAGAGTGATGGTCTTC 199469 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| |||||||| ||| Sbjct 199470 CCTGTCAGGGTCTTCACAAAAATCTGCATCTTG 199502 >seq308 Length=189498 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || | || || ||||| || |||||| | || | || ||||| Sbjct 115910 ACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAAA----GTACGTCCATCTTCC 115965 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 115966 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 116025 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||| ||||| || || |||| || | || ||||| Sbjct 116026 ATCTTGGCCTTTACATTTTCTTTTGTATCCGAGGGCTCCACCTTGAGAATGATGGTCTTC 116085 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || || || || |||||||| Sbjct 116086 CCCATCAGGGTCTTCACGAAAATCTGCAT 116114 >seq6385 Length=214227 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || |||||||| | ||| | || ||||| ||||| || |||||||| | || || || Sbjct 138787 TTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGC 138728 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || |||||||| || ||||| |||||||| ||||| || ||||||||||||| ||||| Sbjct 138727 TGGTCAGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCC 138668 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| | || || ||||| | || || || || | || |||||||| Sbjct 138667 GAGGGCTCGACCTCGATAGTGATGGTCTTCACTGTTAGGGTCTTCATGAAAATCTGCATC 138608 Query 104561 TTG 104563 ||| Sbjct 138607 TTG 138605 >seq12619 Length=221303 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| |||| ||| | || | || ||||| Sbjct 123114 ACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTTAGACAAAGGACATCCATCTTCC 123055 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||| || || || || || || |||| ||| | |||||| |||||||| Sbjct 123054 AGTTGCTTGCCAGTAACGATCAGTCTTTGCTGGTCAGAAGGAACTCCTTCCTTATCCTGG 122995 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || | |||| || | || ||||| Sbjct 122994 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTAAGAGAGATGCTCTTA 122935 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || | || |||||||| Sbjct 122934 CCTGTCAGGGTCTTCATGAAAATCTGCAT 122906 >seq2112 Length=273871 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 175455 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTTGAAGGAATTTTCTTCTCGGGATCTTTTGCT 175514 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 175515 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 175574 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 175575 ATCAGCAGAGATGAAG 175590 >seq23701 Length=42229 Score = 104 bits (114), Expect = 5e-17 Identities = 148/213 (69%), Gaps = 19/213 (9%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || |||||| Sbjct 16819 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCT 16878 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||| |||||||| |||||||| |||| ||| Sbjct 16879 AGTTGCTTGCCAGG-------------------TCAGGAGGAATTCCTTCCTTATTCTGG 16919 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||| ||||| || || ||||| || || || ||||| Sbjct 16920 ATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCAACCTCAAGAGTGATGGTCTTC 16979 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || ||||| |||||||| ||| Sbjct 16980 CCCATCAGGGTCTTCACAAAAATCTGCATCTTG 17012 >seq31526 Length=98297 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 89438 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 89379 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || || | |||||| || || |||||||| | ||| ||||| || ||| Sbjct 89378 AAGAAAAACAACCAGGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACATTG 89319 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| ||||||||||||| Sbjct 89318 TGGTGGATCGGAATTAAGTGGGTCGCAGGAGGACA 89284 >seq73548 Length=8992 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || | |||||| || || || || ||||| ||||| |||||||| Sbjct 7444 CCATCTTCCAATTGCTTGCTAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTCG 7385 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| | ||| |||| || || | || Sbjct 7384 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCAGGAGTG 7325 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||| | || || || || | || |||||||| ||| Sbjct 7324 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 7283 >seq28705 Length=25291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || | |||||| || || || || ||||| ||||| |||||||| Sbjct 13391 CCATCTTCCAATTGCTTGCTAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTCG 13450 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| | ||| |||| || || | || Sbjct 13451 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCAGGAGTG 13510 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||| | || || || || | || |||||||| ||| Sbjct 13511 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 13552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1139048090935732