Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq790 96.9 4e-15 >seq790 Length=204519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||||||| |||||| | ||||| || | ||| | || ||||| ||||||||||| || Sbjct 32977 TTAGGCTGCAAACATGTTAAAGGCATCCTGTTATACGGGCCTCCAGGTTGCGGTAAGACT 33036 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 || |||||||| |||| |||| | || ||| | || || |||| | || || Sbjct 33037 CTATTGGCTCGACAGATTG-GCAAGATGTTGAATGCAAGAGAGCC--TAAAGTGGTCAAC 33093 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 33094 GGGCCGGAAATTCTCAACAAATATGTGGGAGAATCAGAGGCTAACATTCGTAAACTCTTT 33153 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 33154 GCTGATGCTGAAGAGGAGCAAAGGA 33178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589636355936400