Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq28392 150 2e-31 >seq28392 Length=124393 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 6077 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 6018 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | ||| || ||| ||||||||||| || ||||| |||| Sbjct 6017 TGCCACAGGCTGAGAACCACGGCCCTGACATCAAGGAGCACGTGAATTCCCTGGGGGAGA 5958 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||||||| ||||| || |||| Sbjct 5957 AGCTGAAGACCCTCAGGCTGCGGCTGCG 5930 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 3750 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3691 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | ||| |||| ||||| || Sbjct 3690 TAGAAACCTACGTGACAATGAAGAT 3666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541651020359040