Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq26273 161 1e-34 seq1721 114 2e-20 >seq26273 Length=48589 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| ||| || ||||| |||||| Sbjct 20469 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTTTTTAAGCACATCACACACT 20410 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 20409 CGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 20350 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | ||| || | | || || |||||||| | Sbjct 20349 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCG 20290 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 20289 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 20241 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 19328 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 19269 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 19268 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 19209 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 19208 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 19170 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || ||||| || | Sbjct 21063 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGATGCCATGTTCC 21004 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | || || ||||| || | || | |||| |||| |||||||| | Sbjct 21003 AGTAAGATAGAGTTGTTATAGATAAACTGCTGATAGTTGTACTCCTGGCCATCAATCTGA 20944 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| || | ||||||||| || | | |||||||||| | | ||||| Sbjct 20943 AAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCGATACGG 20884 Query 9502 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 ||||||||||||||| | | ||| ||||| || || | |||| || | ||||| Sbjct 20883 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 20825 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || | ||||| || || Sbjct 20824 ATAGCCACTCAAGTGCTGTACGTA 20801 >seq1721 Length=164191 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || ||||| || ||||| | |||||||| | || || |||||| |||| Sbjct 50915 AAGCCCACCTCACCGCCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 50974 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| |||||||||| || | || ||||| || |||||| Sbjct 50975 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 51034 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | || || |||| ||| ||||||||| Sbjct 51035 GAGTTCGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAATTCCAAAGCATCGATGTCT 51094 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| || |||| Sbjct 51095 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCACCTG 51137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701110273955760