Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08]
837,179 sequences; 2,878,133,036 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq26273 161 1e-34
seq1721 114 2e-20
>seq26273
Length=48589
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || || | |||||||||||| ||| ||| || ||||| ||||||
Sbjct 20469 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTTTTTAAGCACATCACACACT 20410
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| ||||||||||| ||||| || || ||||||||||| |||||||||||||| |||||
Sbjct 20409 CGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 20350
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | || | ||| || | | || || |||||||| |
Sbjct 20349 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCG 20290
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || | ||| ||||
Sbjct 20289 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 20241
Score = 107 bits (118), Expect = 3e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 19328 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 19269
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 19268 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 19209
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186
||| |||| | || | ||||| ||||| ||||||
Sbjct 19208 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 19170
Score = 86.0 bits (94), Expect = 9e-12
Identities = 179/264 (68%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | ||||| ||||| || | ||| || ||||| || |
Sbjct 21063 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGATGCCATGTTCC 21004
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441
| | || || ||||| || | || | |||| |||| |||||||| |
Sbjct 21003 AGTAAGATAGAGTTGTTATAGATAAACTGCTGATAGTTGTACTCCTGGCCATCAATCTGA 20944
Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501
|| | || |||| || | ||||||||| || | | |||||||||| | | |||||
Sbjct 20943 AAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCGATACGG 20884
Query 9502 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560
||||||||||||||| | | ||| ||||| || || | |||| || | |||||
Sbjct 20883 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTG 20825
Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584
||||| || | ||||| || ||
Sbjct 20824 ATAGCCACTCAAGTGCTGTACGTA 20801
>seq1721
Length=164191
Score = 114 bits (126), Expect = 2e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| || ||||| || ||||| | |||||||| | || || |||||| ||||
Sbjct 50915 AAGCCCACCTCACCGCCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 50974
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| |||||||||| || | || ||||| || ||||||
Sbjct 50975 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 51034
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || ||| || | | | || | || || |||| ||| |||||||||
Sbjct 51035 GAGTTCGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAATTCCAAAGCATCGATGTCT 51094
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| || || || | || || || || ||||| || ||||
Sbjct 51095 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCACCTG 51137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 701110273955760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |