Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq24785 123 3e-23 seq2592 114 1e-20 seq385862 109 6e-19 seq716878 102 9e-17 seq2112 95.1 1e-14 seq27981 82.4 8e-11 >seq24785 Length=72491 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | | ||| ||| || |||||||||| ||||| | Sbjct 37551 AGCTCCTCCTCGGTTTCAAACTGAGCCAGAACAGCTTCCCATGAAGTACAGAATGTCTGA 37610 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||| ||||| ||||||||||| |||||||| ||| | |||||||||||| Sbjct 37611 CTGGATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAGCACTTAGACCCAAATCCAATC 37670 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 37671 CATCCTTTTGGGCAGGTGACATA 37693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610 ||||| || || || |||| ||| ||||||| ||||| ||| ||||||||| |||| ||| Sbjct 36850 TTATATTTAGAGTTGTCTGTCCACTTCCAAGCATGATGTGATGATTCTCTGCTAAGGCCG 36909 Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651 |||||||| || |||| |||| |||||| | | ||| || Sbjct 36910 ATCCAATGGTCAGAAGGGCCTTTGTATCTTCTCAGAAAGTT 36950 >seq2592 Length=73539 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | | ||| ||| ||| ||||||||| ||||| | Sbjct 65320 AGCTCCTCCTCGGTTTCAAACTGAGCCAGAACAGCTTCCAGTGAAGTACAGAATGTCTGA 65261 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||| ||| ||| ||||| ||||| ||||| || ||| | |||||||||||| Sbjct 65260 CTGAATGTCCAACTTTCTGAGTCTTCCGAAAAATAAAAACACTTAGACCCAAATCCAATC 65201 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 65200 CATCCTTTTGGGCAGGTGACATA 65178 >seq385862 Length=252 Score = 109 bits (120), Expect = 6e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | | ||| ||| || |||||||||| |||| | Sbjct 120 AGCTCCTCCTCGGTTTCAAACTGAGCCAGAACAGCTTCCCATGAAGTACAGGATGTCTGA 179 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||| ||||| ||||||||||| |||||||| ||| | |||||||||||| Sbjct 180 CTGGATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAGCACTTAGACCCAAATCCAATC 239 Query 130773 CATCCCTTTGGGC 130785 ||||| ||||||| Sbjct 240 CATCCTTTTGGGC 252 >seq716878 Length=438 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 130717 ATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATC 130776 |||||||||| ||||| ||||||||||| |||||||| ||| | |||||||||||||||| Sbjct 13 ATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAGCACTTAGACCCAAATCCAATCCATC 72 Query 130777 CCTTTGGGCAAGTAACATA 130795 | |||||||| || ||||| Sbjct 73 CTTTTGGGCAGGTGACATA 91 >seq2112 Length=273871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 186672 TTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACG 186613 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || ||||| ||| || || |||||||| || || || || || || ||| Sbjct 186612 CTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTC 186553 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAA 21276 |||||||||||| |||||||| | || ||| Sbjct 186552 CATAAAATCAAAGGGATTTTCTGCTTGAAA 186523 >seq27981 Length=93525 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 19588 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 19647 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 19648 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 19687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526334597751960