Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq33763 127 1e-24 seq113559 118 7e-22 seq17872 118 7e-22 seq18617 113 3e-20 seq9815 107 1e-18 seq451115 100 2e-16 seq628766 93.3 3e-14 seq3524 87.8 1e-12 seq2898 87.8 1e-12 seq74166 86.0 4e-12 seq10000 86.0 4e-12 seq2775 86.0 4e-12 seq5931 84.2 1e-11 >seq33763 Length=5759 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2059 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2118 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2119 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2153 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 5369 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGC 5428 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 5429 CGGTATTTAGCCTTA 5443 >seq113559 Length=201 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| |||| || |||||||| Sbjct 159 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGCAGGGACAGTGGGAATCTCGT 100 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||| ||||||||||||||||| Sbjct 99 TCATCCATTCATGCGCGCCACTAATTAGATGACGA 65 >seq17872 Length=21729 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 6281 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 6340 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||||||||| Sbjct 6341 TCATCCATTCATGCGCGTCACTAGTTAGATGACGA 6375 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 9477 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATCGGTCTCGT 9536 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9537 GCCGGTATTTAGCCTTA 9553 >seq18617 Length=77655 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | |||||||||| | || |||||| | Sbjct 28854 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGATAGAGACAGTGGGAATCTCAT 28795 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 28794 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 28760 >seq9815 Length=175929 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 ||||| | |||||||||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 59809 AACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCT 59750 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| || || ||||| || || | ||| || || | || | |||||||| ||| Sbjct 59749 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCC 59690 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | | ||||| | || || || || | || || || Sbjct 59689 TGGATCTTGGCCTTTACATTTTCTATTGTATC-CGACGGCTCGACCTCGAGAGTGATGGT 59631 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 59630 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 59595 >seq451115 Length=268 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||| ||||| || |||||||| Sbjct 76 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 135 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||| ||||||||||| || Sbjct 136 TCATCCATTCATGCACATCAGTAATTAGATGATGA 170 >seq628766 Length=340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 282 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 340 >seq3524 Length=523725 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 364063 AAGCCTGTTCCCTTGGCTGTGGTTTC-CTGGATAGTAGGTAGGGACAATGGGAATCTGGT 364005 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | |||| |||||| |||| || Sbjct 364004 TCATCCATTCATGTGTGTCAGTAATTACATGATGA 363970 >seq2898 Length=246904 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||| | || ||||| | | | || |||||| | Sbjct 65203 AAGCCCGTTCCCTTGGCTGTGTTTTCGATGGACAGTAGGTGGAGACAGTGGGAATCTCTT 65144 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| | ||||||||||||||||| Sbjct 65143 TCATCCATTCATGTGAGTCACTAATTAGATGAC 65111 >seq74166 Length=18784 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| |||||||||||||||| | |||||||||||| || || |||||| Sbjct 16355 CTCTCTCTTCAAATTTCTTTTCAACTTTCCTTTACGGTACTTGTTGACTTTCAGTCTCGT 16296 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 16295 GCCGGTATTTAGCCTTA 16279 >seq10000 Length=929206 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||| | |||| || || || ||| || || || |||||||||| Sbjct 685752 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 685693 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || |||||||| || || || || || || | || Sbjct 685692 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGG 685633 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| || || |||||| |||| || || || | || | Sbjct 685632 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 685573 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || || || |||| ||| |||||||| || ||||| || Sbjct 685572 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 685521 >seq2775 Length=875267 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 378404 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 378345 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || | ||||| || || | ||| || || | || | ||||| || | Sbjct 378344 TTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATT 378285 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA---CTTTCAACTTCTAATGTAAT 38281 | || || ||| ||||| | | ||||| | | ||| || || | || || Sbjct 378284 CTGGATCTTGGCCTTTACATTTTCTATGGTATC-CGAGGGCTT--GACCTCGAGAGTGAT 378228 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || ||||||| || ||||| || |||||||| || Sbjct 378227 GGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 378189 >seq5931 Length=560455 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| |||| | |||||||| |||| | || Sbjct 199287 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGT-AGCAGACAAAGTACGTCCATC 199345 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || || || || || | ||| || | || || | ||||| || || Sbjct 199346 TTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAGGAATTCCTTCCTTATC 199405 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| || || || | || || || Sbjct 199406 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCACCTCAAGAGTGATGGT 199465 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||| ||| ||||| || |||||||| || Sbjct 199466 CTTCCCTGTCAGGGTCTTCACAAAAATCTGCATCTT 199501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331529693838749