Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9815 107 2e-18 seq7597 98.7 1e-15 seq2775 93.3 4e-14 seq39760 91.5 1e-13 >seq9815 Length=175929 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 || |||| ||| | | ||||||||||||||||||||||| || ||||||| || Sbjct 59809 AACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCT 59750 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || ||||| || || | | |||| || | || ||||| ||||| || |||||||| || Sbjct 59749 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCC 59690 Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 ||| || |||| | ||| | || || | || ||| ||||||| || | || Sbjct 59689 TGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGATGGTC 59630 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || || ||||||||||| Sbjct 59629 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 59598 >seq7597 Length=568930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || ||||| || | | Sbjct 229829 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCA 229770 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| ||||| || |||||||| || ||| || || | Sbjct 229769 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACA 229710 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | ||||||||||| || |||||| Sbjct 229709 TTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTTAGGGTTTTT 229650 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 229649 ACAAAGATCTGCAT 229636 >seq2775 Length=875267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || | | | Sbjct 378385 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCAAGCA 378326 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| ||||| || ||||| || | ||| || |||| Sbjct 378325 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTACA 378266 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||| || | | || ||||||| || | || || || |||||||| || Sbjct 378265 TTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTC 378206 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 378205 ACAAAAATCTGCAT 378192 >seq39760 Length=42403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| ||| Sbjct 35698 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 35757 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || ||||| || | |||||| ||||||||||||| |||||||| Sbjct 35758 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCGGTCTC 35807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491069144252880