Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9815 100 2e-16 seq5931 98.7 7e-16 seq2775 84.2 2e-11 >seq9815 Length=175929 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||||| |||| |||||| || || || ||||| |||||||| || Sbjct 59824 CCACCACGAAGTCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 59765 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | | ||||| | ||| |||||||| | |||| | || ||||| ||| Sbjct 59764 AAAGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 59705 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || || ||| |||||| ||||||| ||||| || || Sbjct 59704 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACC 59645 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || || ||||| ||||| || Sbjct 59644 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 59595 >seq5931 Length=560455 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || |||| |||||| || || || ||||| |||||||| || | Sbjct 199273 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTA---GCAG 199329 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | ||| |||||||| | |||| | || |||| | Sbjct 199330 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAG 199389 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || || ||| |||||| ||||||| ||||| || | Sbjct 199390 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCA 199449 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || |||||||| || || |||||||| ||||| || Sbjct 199450 CCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATCTT 199501 >seq2775 Length=875267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 378419 GCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 378360 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | ||||| | ||| |||| ||| | |||| | || ||||| || Sbjct 378359 CAAAGTACGTCCATCTTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 378300 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| | || ||| |||||| ||||||| ||||| | || Sbjct 378299 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGAC 378240 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 378239 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 378189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353745486872015