Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9815 100 3e-16 seq7597 93.3 4e-14 seq5931 86.0 6e-12 seq39760 84.2 2e-11 >seq9815 Length=175929 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || || ||||||||||| || || || |||||||| || || || || Sbjct 59824 CCACCACGAAGTCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 59765 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||| ||| || || || | |||| || ||||||||| || ||| Sbjct 59764 AAAGTACGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 59705 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||||||||| || || || || | ||||| || || || | |||||| Sbjct 59704 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACC 59645 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| | || || || || || || || || ||||| |||||| Sbjct 59644 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATC 59597 >seq7597 Length=568930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || ||||| || || || || ||||| || || || | ||| ||| ||| Sbjct 229844 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 229785 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| ||||| | ||||| | |||||||| || || ||||||||||| ||||| Sbjct 229784 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGG 229725 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | |||||| || ||| || || ||||| | ||||| Sbjct 229724 ATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTA 229665 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||||||||| || ||||| Sbjct 229664 CCAGTTAGGGTTTTTACAAAGATCTGCAT 229636 >seq5931 Length=560455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||||||||| || || || |||||||| || || || || | Sbjct 199273 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTA---GCAG 199329 Query 45174 AC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || ||| |||| ||| || || || | |||| || |||||||| | | Sbjct 199330 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAG 199389 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| ||||| || || || || | ||||| || || || | ||| | Sbjct 199390 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCA 199449 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || ||||| | || || || || || || || |||||||| |||||| Sbjct 199450 CCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATC 199499 >seq39760 Length=42403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| || |||||||||||||||||||| |||| || |||| | ||| ||| Sbjct 35807 GAGACCGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAG 35748 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||||||||||| || ||||| || || || ||| | ||||| Sbjct 35747 AACTTGGGAACCATCAAATGCAGCAACCTGTGCACAGAAAT 35707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447273105162840