Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2798 154 6e-32 seq9815 114 5e-20 seq5931 102 3e-16 seq412565 100 1e-15 seq43911 100 1e-15 seq2775 100 1e-15 seq755463 98.7 4e-15 seq308 91.5 6e-13 seq2886 87.8 7e-12 seq24066 86.0 2e-11 >seq2798 Length=445656 Score = 154 bits (170), Expect = 6e-32 Identities = 349/524 (67%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | | | ||||| | Sbjct 156162 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCT 156221 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | ||| | || || ||| |||||| Sbjct 156222 GTCGTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCC 156281 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || || ||||| |||| ||| ||||| |||||| ||||| || ||| Sbjct 156282 AAGGTAATGGTGTCCTACAAAGGGGAAAAGAAAGCTTTTTATCCTGAGGAAATCTCTTCT 156341 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||| ||||| || || || || | | | || | | || || || Sbjct 156342 ATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCTACACTGTCACCAAT 156401 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || || |||||||| | ||||| || || || || |||||| Sbjct 156402 GCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 156461 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||| || ||| | ||||| || ||||||| ||||||||||| || ||||| | Sbjct 156462 GGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCTACTGCTGCTGCCATT 156521 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | || | |||||| | Sbjct 156522 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGATCTG 156578 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || || || | || || |||||| | ||||| || ||| Sbjct 156579 GGTGGAGGCACATTTGATGTATCCGTCCTGACCATAGATGATGGGATTTTTGAGGTTAAG 156638 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| || || || | || || || ||| |||| || Sbjct 156639 GCCACAGCTGGGGACACCCACTTGGGTGGAGAGGATTTTGACAA 156682 >seq9815 Length=175929 Score = 114 bits (126), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || ||||| || || || | || Sbjct 59598 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCGTCG 59657 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||| ||||||||||||||||| || Sbjct 59658 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAG 59717 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| |||||||| | |||||| | || || || Sbjct 59718 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAC 59777 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| |||||||| Sbjct 59778 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTAAGACT 59815 >seq5931 Length=560455 Score = 102 bits (112), Expect = 3e-16 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || || || || |||||||| || || | || Sbjct 199498 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTGGAGCCCTCG 199439 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||| || | || Sbjct 199438 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTTACCAG 199379 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | | || || Sbjct 199378 CAAGGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTG-CTACAAC 199320 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 199319 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 199282 >seq412565 Length=258 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 94 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 153 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 154 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 206 >seq43911 Length=16071 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 7057 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 6998 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 6997 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 6945 >seq2775 Length=875267 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || || || || ||||| || || | | || Sbjct 378192 ATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCG 378251 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || || || || |||||||||||||||||||||| || Sbjct 378252 GATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGACCAG 378311 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | | || ||||| ||||||||| | |||||| | || || || Sbjct 378312 CAAAGACTGATCTTTGCTTGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 378371 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 378372 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 378409 >seq755463 Length=535 Score = 98.7 bits (108), Expect = 4e-15 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 428 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 371 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 370 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 311 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 310 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 251 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| ||||| | | Sbjct 250 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGA 191 Query 96287 TAGGG 96291 || || Sbjct 190 TATGG 186 >seq308 Length=189498 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || | ||| | || || | || Sbjct 116114 ATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTGGAGCCCTCG 116055 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | | || || || || ||||||||||||||||||||||| || Sbjct 116054 GATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 115995 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | ||||| || || || Sbjct 115994 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAAC 115939 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 115938 ATTCAAAAGGAGCCCACTCTTCATCTAGTGTTGAGACT 115901 >seq2886 Length=1484922 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 1179987 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 1179928 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 1179927 ACAGCCGCTGCTCTGGCTTATGGTCTAGACAAATCAGAAGA 1179887 >seq24066 Length=70450 Score = 86.0 bits (94), Expect = 2e-11 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96050 GCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGAT 96109 ||||| | ||||||| ||||| || |||| || ||| ||| | | || | ||| Sbjct 67355 GCAATCTCAGGCACTAAAGGATCATCTAGATTGGGATCACACAACAGAGAACAGATGGAC 67414 Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169 ||||||||||| ||| ||| |||||| ||| | | || |||||| | |||| Sbjct 67415 AAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACTGTAGAATATCAAGACAA 67474 Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229 || || || | ||||||||||||||||||| ||| ||||| || ||||| Sbjct 67475 ATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGT 67534 Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289 || || | || || ||| || ||| |||| || ||||||||||||| |||| Sbjct 67535 GGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAG 67594 Query 96290 GG 96291 || Sbjct 67595 GG 67596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1954526141209332