Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2798 187 2e-41 seq5802 179 3e-39 seq6866 125 5e-23 seq7000 104 2e-16 seq17479 86.0 5e-11 seq10770 86.0 5e-11 >seq2798 Length=445656 Score = 187 bits (206), Expect = 2e-41 Identities = 705/1087 (65%), Gaps = 23/1087 (2%) Strand=Plus/Minus Query 517583 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 517642 ||| ||| ||| ||||| |||| ||||| ||||| ||||| || ||||| || || | Sbjct 157122 CCATCAA-AATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCATCGGGGTTGATG 157064 Query 517643 GTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAAT 517701 | | || |||| |||||| || | | || || | | | |||||||| || Sbjct 157063 CTCTTGTTGAGTTCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA-ACCTTAGGGAT 157005 Query 517702 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 |||| || || || ||||| ||||| ||||| | | | |||||||| ||| | ||| Sbjct 157004 TCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTATCCATTTTGGCATC 156945 Query 517762 CAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTC 517821 | | | | || || || || || || | ||||||| ||||| ||| || ||||| Sbjct 156944 CCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCACACAGCTCTTC 156885 Query 517822 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 517879 || ||||| || || || | || || ||||| ||||| | | || |||| | Sbjct 156884 AAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAAAGTGAGTCAATT 156827 Query 517880 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 517939 || | | | || || ||| || || | | || || | || || || || | Sbjct 156826 TCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCTCGCAGGCGGTGCGC 156767 Query 517940 AGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 517995 | | | | || |||| | ||| |||| || | |||| ||| |||||||| Sbjct 156766 AACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGTTTCCTCTTGAA 156711 Query 517996 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 518055 ||||| ||| | | ||||| | || |||||||| || || ||||| | || | Sbjct 156710 CTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACCCAAGTGGGTGTC 156651 Query 518056 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATG 518115 || | || || | || | |||| ||||| || | | || | | ||||||| Sbjct 156650 CCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACGGATACATCAAA 156591 Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGTTTTTATCA 518173 || || ||||||| |||||| || | |||| || | || || | || ||| | | | Sbjct 156590 TGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGACCTGCTTTATCT-A 156532 Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233 || ||||| |||| ||||||||||| |||||||| |||||||| | ||||| ||||| Sbjct 156531 AG-CCATAGGCAATGGCAGCAGCAGTAGGTTCATTGATAATTCTTAGCACATTGAGACCT 156473 Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293 || || |||||||| || ||||| || | ||| || || || || || || || ||| Sbjct 156472 GCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGTAGGCTGGCACA 156413 Query 518294 GTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTA 518353 || || || |||| || || | || | | |||| || || | ||||| ||| Sbjct 156412 GTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTCTCCTTCATCTTA 156353 Query 518354 CTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT--CATTTTGATATG 518411 | | | ||| || || |||| || || || | |||| || | |||| || | Sbjct 156352 GTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCCCCTTTG-TAGG 156295 Query 518412 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATAT 518471 | || | | || || || | || || |||| || ||||| |||||||| Sbjct 156294 ACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGGCCAAAGTTTCATAT 156235 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 ||||||| || | |||||||| | ||| ||||| | ||||| |||||||| | || Sbjct 156234 CTGATTGCACGACAGGATCATTAAATTTTCTGCCAATCAGACGTTTGGCATCAAAGACAG 156175 Query 518532 TATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCT 518591 | || ||||| || || | || | ||||| ||||| || || || | || || | Sbjct 156174 TGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCACCGATGAGCCGCTCGGTGT 156115 Query 518592 CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAA 518651 |||| || | || || || || ||||| || || || ||||| || || || || | Sbjct 156114 CTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCA 156055 Query 518652 CTTTACC 518658 | || || Sbjct 156054 CCTTGCC 156048 >seq5802 Length=387644 Score = 179 bits (198), Expect = 3e-39 Identities = 910/1429 (64%), Gaps = 55/1429 (4%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| || || ||||||||||| |||||| |||||||| || Sbjct 260523 TTATCCACAGCAGAGACATTGAGGATGCCATTGGCATCAGTATCAAAAGTGACTTCGATC 260464 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | | ||||| || || ||| | | ||| | || ||| || Sbjct 260463 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCAAGAAAGTTG 260404 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 ||||| || || | | | ||||| || ||| || || || ||| || || Sbjct 260403 TTATCCTTGGTCATGGTACACTCACCTTCATAAACCTGAATGAGCACACCAGGCTGGTTG 260344 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAAT 517488 || || || || || || | |||| | | || |||||| || || || | || Sbjct 260343 TCAGAGTAGGTGGTGAA-AGTCTGCCTCTGCTTGGTAGGAATGGTGGTATTGTGCTTGAT 260285 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 | ||||| | ||||| || ||||| | | || ||||||||||||||||| | Sbjct 260284 GAGGACAGTCATGACTCCACCAGCAGTTTCAATTCAGAGGGAAAGAGGAGTGACATCCAA 260225 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 || | | | ||||| |||||| | | | |||| ||| ||||| || | ||| Sbjct 260224 CAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCTGACAA-AATGGCTGCCTGGACAGC 260166 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 517668 |||||||||||||||| |||| || | | | | ||| |||| ||| ||| |||| Sbjct 260165 TGCACCATATGCAACAGTGTCATTGGGGCTGATGCTCTTATTCAGTTCTTTCCCACTGAA 260106 Query 517669 AAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 || | ||||||| ||| | ||| || || || | ||| || || || || |||| Sbjct 260105 GAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCCACCAAGACAA 260047 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCA 517786 | || || | ||| ||||| ||||| || | |||| | |||| || || |||| || Sbjct 260046 TATCGTGGATCTGAGATTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCA 259987 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | | | |||||||| | | |||| || ||| ||| Sbjct 259986 GGATGC-CACAGAACAAGTCAGCATTCAGTTTGTCAAATC-----------AGA------ 259945 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG---TCGAAGAA 517903 | | |||||||| | | |||||| | ||| | || || | | ||||| Sbjct 259944 ----AGTTGATTCCTTCATAGAGGAAATCAATCTTAATACTGGTCTGGGCGCTGGAAGA- 259890 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 517963 || ||||||| |||||| | ||| | || | | || | | | || | || || Sbjct 259889 GAGAGTGCAC--TTAGCAAGCTCAGAAGCAGGACAGAGGCAATGGACAGCCCT--CTTAT 259834 Query 517964 TGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTA--CAAG 518019 | | ||| | || | | ||| | |||||| | ||| | ||| | | | Sbjct 259833 TCTCACTAATATACTTCTTGTGTTTGCACTTGAACTTGGCAATGAA--ATGGTTGCCCAT 259776 Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 | ||| ||||| ||||| || ||| | ||||| ||| | ||| | | || | || Sbjct 259775 GCCATTGTCAAAGTCTTCTCCAGACAAGTGAGTATCTCCAGCTATAGATTTGACCTCAAA 259716 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | |||||| |||| || | | | |||||| | ||||| || | |||||| || Sbjct 259715 GATTCCATCCTCAATAGTGAGGATTGACACATCAAAA-TGCCACCTCCTAAATCAAAGAT 259657 Query 518140 AAGTACATTCATTTCTTTG-TCTTGG-TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || ||||| | ||| || || ||||| || | ||||| |||| |||||||||| Sbjct 259656 CAGCACATT--TCTCTCTGCTCAAACCTTTTTGTCTAAGCCATAGGCAATAGCAGCAGCA 259599 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||||||||| || ||||| | ||| | ||||||||||| |||| | |||||| || Sbjct 259598 GTTGGTTCATTGATGATTCTAAGTACAATGAGACCAGCAATAGTTCCAGTATCTTTGGTA 259539 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 || || || || || |||| || ||||| || || | ||| |||| || || Sbjct 259538 GCCTGATACTGAGAGTCACTAAAGTAGGCAGGTACTGTGACAACAGCATTGGTAACAGTC 259479 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 || |||| || || || ||| ||||| || | | | ||| ||||| || | Sbjct 259478 TTCCCAAGGTAGGCATCTGTGATTTCCTTCATCTTTGTCAGGACCATGGATGACATCTCC 259419 Query 518378 TCTGGGG-----AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 || | | || | ||| | || | || ||||| || | ||| | Sbjct 259418 TCCAGAGGTGTCAAAAACTCTTTGTCTCTCCCTTGTACTCTACTTAAACCTTAGGTCTGC 259359 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 | || |||| || | || ||||| | ||||||||| || || ||| ||| Sbjct 259358 CAGCATCATTCGCCACCATGAAGGGCCAATGTTTCATATCGGACTGGACAACAGCATCA- 259300 Query 518493 TAAAATCTCTA-CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 | |||||| || ||||| | | |||| |||||||||| |||||||| |||| |||| | Sbjct 259299 TCAAATCTTTATCCAATAAGTTGTTTGGCATCAAAAACTGTATTGGTGAGATTCATTG-A 259241 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 || | | || || ||||| || |||| ||||| || | ||||| | |||||| | Sbjct 259240 ACTAGGTTCTTTGCAGCATCACCGATCAATTGTTCGGTATTAGTAAAGGCAACATAGCTT 259181 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 || || || | || || ||||| || ||||| ||||| || || |||| Sbjct 259180 GGGGTCGTTCAGTTCCCCTGATCGTTGGCAATTATTTCCACCTTTCCAT 259132 >seq6866 Length=583421 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| |||||||| ||||| | ||| Sbjct 74159 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 74218 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || ||||| ||| Sbjct 74219 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAT 74278 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || |||| ||| |||| Sbjct 74279 GCAGGTACTGTAACAACAGCAT 74300 >seq7000 Length=770865 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 481666 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 481725 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 481726 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 481785 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 481786 GAAGCTTCTCATAAA 481800 >seq17479 Length=99570 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 518151 TTTCTTTGTCTTGGTTTTTA-TCAAGACCATACGCAAAAGCA-GCAGCAGTTGGTTCATT 518208 ||| ||||| || ||||||| || || | || | | | || || ||||| | ||||| Sbjct 3286 TTTTTTTGTTTTTGTTTTTAATCCAGGCGATG-GAATATGCCTGCTGCAGTAAGCTCATT 3344 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||| ||||||| || ||||||| ||| || | | ||||||||| ||||| || | || Sbjct 3345 AATGATTCTCAGAATATTAAGATCAGTGATGATCCATGCATCTTTGGTGGCCTGACACTG 3404 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||| || || || | ||||||||||| || || Sbjct 3405 TGAATCATTTAAGTAGGTTGGAACAGTAATTACTGC 3440 >seq10770 Length=283643 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | || || Sbjct 105903 TGTCGTAGCTACCGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCCAAGTCAT 105844 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || ||||| ||| | || ||| ||||| || || ||||||||||| || || Sbjct 105843 TCATTACGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATTGGTAGAGCTGGCCG 105784 Query 367113 TGATGGA 367119 |||||| Sbjct 105783 AGATGGA 105777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739278820352374