Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq1487 91.5 1e-13 seq35065 87.8 1e-12 >seq1487 Length=10850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||||| || ||||| || || | | ||| || | | ||||| Sbjct 3767 CCTCATGCTGCACATGACATGTGTATTTCTGTTCCTCTCCAGAAGGCACCACCACGGCTG 3708 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || ||| | | | Sbjct 3707 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 3648 Query 469 TCAGTTGCTCTGCTCCCATG-TGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || | | ||| | |||| |||||||| | | || ||| |||| |||||||| | Sbjct 3647 TCTGGTCCTC-CCCATCATGCTGCCACGTCAGTGAGATCTCCTCAGGGTAGAAGCCCAGG 3589 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 |||||||| | || || || | |||||||| | | || |||||| || ||| | Sbjct 3588 GCCCAACACCTCAGGGTGACCTCACGGTCAGAGATGGGGTGATGGGTCACATGTGCCTTT 3529 Query 588 GGAG 591 |||| Sbjct 3528 GGAG 3525 >seq35065 Length=15776 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 820 GCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGT 879 |||||||||| | || || || |||| || ||||| || ||||| |||||| | | Sbjct 12949 GCGGTCCAGGAGCGCAGGTCCTCGTTCAGGGAGATGTAATCTCTGCCGTCATAGCCTTCC 12890 Query 880 TGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGG 939 |||| ||| || || |||||| || ||||||||||| | |||||| ||||||| ||| Sbjct 12889 TGACTGTACCCGCGGAGGAGGCGCCCGTCCGGCCCCACGTCGCAGCCGTACATCCACTGG 12830 Query 940 AGGGTATG 947 | ||| || Sbjct 12829 ACGGTGTG 12822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393688937961624