Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7597 123 2e-23 seq10000 98.7 6e-16 seq2775 87.8 1e-12 >seq7597 Length=568930 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||||||| | || |||||||| ||||| ||||| || Sbjct 230318 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 230259 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || | | ||||||||| | || Sbjct 230258 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 230199 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 230198 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 230141 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 230140 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 230092 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 230072 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 230013 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || | | ||||||||| | || | ||||||||||| Sbjct 230012 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 229953 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 229952 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 229895 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||| ||||||||||| Sbjct 229894 TACCGGTCAAGGTCTTCACGAAGATCTGCAT 229864 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 229844 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 229785 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || | | ||||||||| | || | || || || || Sbjct 229784 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGG 229725 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| | ||| || || | || ||||||| Sbjct 229724 ATCTTCCCCTTGAC--ATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTT 229667 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || || |||||||||||||| Sbjct 229666 TACCAGTTAGGGTTTTTACAAAGATCTGCAT 229636 >seq10000 Length=929206 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 685942 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 685883 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 685882 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 685823 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 685822 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 685763 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 685762 AAGATCTGCATA 685751 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 686170 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 686111 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 686110 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 686051 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 686050 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 685991 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 685990 AAGATCTGCATA 685979 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 686398 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 686339 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 686338 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 686279 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 686278 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 686219 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 686218 AAGATCTGCATA 686207 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 686626 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 686567 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 686566 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 686507 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 686506 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 686447 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 686446 AAGATCTGCATA 686435 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 686854 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 686795 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 686794 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 686735 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 686734 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 686675 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 686674 AAGATCTGCATA 686663 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 687082 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 687023 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 687022 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 686963 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 686962 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 686903 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 686902 AAGATCTGCATA 686891 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 687310 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 687251 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 687250 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 687191 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 687190 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 687131 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 687130 AAGATCTGCATA 687119 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || |||||||| Sbjct 687538 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 687479 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 687478 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 687419 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 687418 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 687359 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 687358 AAGATCTGCATA 687347 >seq2775 Length=875267 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || || |||||||| ||||| || | | ||| || Sbjct 378406 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA 378347 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||| || || | ||||| || |||| ||||||||| | || | || ||||| Sbjct 378346 TCTTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 378287 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 | ||||| || || | |||| | || || || || |||| || ||| Sbjct 378286 TTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGTGATG 378227 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| |||||||||||||| |||||||| || Sbjct 378226 GTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 378189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321321324727512