Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_015938.1 Length=89916 Score E Sequences producing significant alignments: (Bits) Value seq397273 138 6e-28 >seq397273 Length=255 Score = 138 bits (152), Expect = 6e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 3847 ACTGCTACGACTGGTGGTTTGATTACCATCACAGCGACACCTGAGAACGGTTTGACGAAA 3906 |||||||| ||||| ||| | | || |||||||| || |||||||||||| |||| || Sbjct 1 ACTGCTACAACTGGCGGTCTTGTAACAATCACAGCTACTCCTGAGAACGGTCTGACTGAA 60 Query 3907 CTGGTAGACCTGTTCATGAAAGATATGTCGGGCTACTTATATTTTCAGAACGCTACATGG 3966 ||||| | ||||||||| ||| ||| || | |||| |||||||| || ||| Sbjct 61 CTGGTTAAGAAGTTCATGAATGATGAGTCTGGAGCACTGTATTGGCAGAACGCAACGTGG 120 Query 3967 GATGATGCACCGCACTTAGATGAGGAAACTAAAAAAGAATTGCTGGCGTCTATTCCATCT 4026 ||||||||||| ||| | ||| || || || ||||| | |||||||||||||| Sbjct 121 GATGATGCACCTCACCTGAGTGAAGAGACGAAGAAAGAGCTTCTGGCGTCTATTCCTGAG 180 Query 4027 TGGCAACACGAAATGCGAAGCAGGGGTATACCAATGATGGG 4067 |||||||| || ||||| | ||| ||||||| |||| Sbjct 181 TGGCAACATGACATGCGTTCTAAAGGTTTACCAATCTTGGG 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 284671917657663