Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5802 197 1e-44 seq2798 154 1e-31 seq6866 122 7e-22 seq9815 105 5e-17 seq2775 105 5e-17 seq412565 96.9 3e-14 seq43911 96.9 3e-14 seq7597 86.0 5e-11 >seq5802 Length=387644 Score = 197 bits (218), Expect = 1e-44 Identities = 382/550 (69%), Gaps = 18/550 (3%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| || || ||||| |||||||| ||||| || ||| |||| || ||| |||||| Sbjct 259132 ATGGAAAGGTGGAAATAATTGCCAACGATCAGGGGAACTGAACGACCCCAAGCTATGTTG 259191 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC-CACTGGTAAT 550162 | || || | || ||||| || | |||||||| ||||| | | || || || ||| Sbjct 259192 CCTTTACTAATACCGAACAATTGATCGGTGATGCTGCAAAGAACCTAGTTCAATG--AAT 259249 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 | |||||||| |||||||||| |||| | |||||| ||| ||| ||||| | | Sbjct 259250 CTCACCAATACAGTTTTTGATGCCAAACAACTTATTGGATAAAGATTTGATGATGCTGTT 259309 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTAT 550282 || ||| | |||||||| |||||||| ||| | | |||| | |||| | |||| | Sbjct 259310 GTCCAGTCCGATATGAAACATTGGCCCTTCATGGTGGCGAATGATGCTGGCAGACCTAAG 259369 Query 550283 ATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTT---CACCA---GAACAAATTTCA 550336 || ||| || |||| | ||| | |||| |||| || | || ||| Sbjct 259370 GTTTAAG-TAGAGTACAAGGGAGAGACAAAGAGTTTTTGACACCTCTGGAGGAGATGTCA 259428 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAA-CAGCCAG-TGCTTTTGTTGGTCAAGAA-GTT 550393 || ||||| | | || ||||| ||| || ||| ||| | |||| |||| ||| Sbjct 259429 TCCATGGTCCTGACAAAGATGAAGGAAATCA--CAGATGCCTACCTTGGG-AAGACTGTT 259485 Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || |||| || | || ||||| || || |||| |||||| || ||| ||||| ||| Sbjct 259486 ACCAATGCTGTTGTCACAGTACCTGCCTACTTTAGTGACTCTCAGTATCAGGCTACCAAA 259545 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 ||| ||||| ||||||||| || | ||| ||| | || ||||||||||| ||||||||| Sbjct 259546 GATACTGGAACTATTGCTGGTCTCATTGTACTTAGAATCATCAATGAACCAACTGCTGCT 259605 Query 550514 GCACTTGCATATGGACTTGATAAACA-TAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || |||| ||||| | || ||| | ||| | ||| ||||| || |||||||| Sbjct 259606 GCTATTGCCTATGGCTTAGACAAAAAGGTTTGAGC-AGAGAGAAATGTGCTGATCTTTGA 259664 Query 550573 TTGTGGAGGT 550582 || |||||| Sbjct 259665 TTTAGGAGGT 259674 >seq2798 Length=445656 Score = 154 bits (170), Expect = 1e-31 Identities = 340/500 (68%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || |||||||| || || ||| | || || || || || | Sbjct 156048 GGCAAGGTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 156107 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAAT 550162 ||||| || || || | | | |||||||| || || | || ||||| || ||| Sbjct 156108 TTCACAGACACCGAGCGGCTCATCGGTGATGCGGCCAAGAACCAGGTAGCCA-TG--AAT 156164 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| | ||||| |||| ||||||||| | Sbjct 156165 CCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCTGTC 156224 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || |||||||||| | ||||||||||||| | | || | || || || | Sbjct 156225 GTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCCAAG 156284 Query 550282 -TATTGAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338 || || | |||| | | ||| | ||| |||| || || |||| || || Sbjct 156285 GTAATGGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTC 156340 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397 |||||| | | || ||||| | || || |||||| |||| | | | || || Sbjct 156341 TATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCA 156399 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| ||||| || || |||||||| ||||| || || || || |||| Sbjct 156400 ATGCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATG 156459 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| || || || ||||| || | |||||||||||||||||||||||||| Sbjct 156460 CAGGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCTACTGCTGCTGCCA 156519 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 156520 TTGCCTATGGCTTAGATAAA 156539 >seq6866 Length=583421 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 74307 GTTACCAATGCTGTTGTTACAGTACCTGCATACTTTAATGACTCTCAGCGTCAGGCTACC 74248 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| || | || || ||||| || |||||| Sbjct 74247 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTAAGAATCATTAATGAGCCAACTGCT 74188 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 74187 GCTGCTATTGCCTATGG 74171 Score = 98.7 bits (108), Expect = 8e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 75136 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 75077 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 75076 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 75017 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | | ||||||||||| || || Sbjct 75016 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCTACCAACACGGTT 74957 Query 550178 TTTG 550181 |||| Sbjct 74956 TTTG 74953 >seq9815 Length=175929 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 59806 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGCCCATCTT 59749 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||| ||||||||||||||||||||||| | Sbjct 59748 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCT 59689 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | |||||||| | || | Sbjct 59688 GGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGATGGTCT 59629 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 59628 TCCCCGTCAGGGTCTTCACGAAAATCTGCAT 59598 >seq2775 Length=875267 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 378400 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 378343 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || | ||||| || ||||||||||| ||||||||||||||||| |||| | Sbjct 378342 CCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATTCT 378283 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || ||||| | | | | |||||||| | || | Sbjct 378282 GGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGTGATGGTCT 378223 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || || ||||| ||||| Sbjct 378222 TCCCCGTCAGAGTCTTCACAAAAATCTGCAT 378192 >seq412565 Length=258 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 94 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 153 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 154 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 206 >seq43911 Length=16071 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 7057 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 6998 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 6997 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 6945 >seq7597 Length=568930 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | | ||| || ||||| |||| || | Sbjct 229856 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGACAGGG 229799 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| || ||||| || | || ||||| || ||||| || | Sbjct 229798 TGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGC 229739 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 ||||||| ||||| || || || || ||| || || ||| | | | || || Sbjct 229738 CTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGC-TCCACCTCC 229680 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||||||||| || ||||| || || || ||||| Sbjct 229679 AGAGTGATGGTTTTACCAGTTAGGGTTTTTACAAAGATCTGCAT 229636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3985022198802710