Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq5085 102 1e-16 >seq5085 Length=131441 Score = 102 bits (112), Expect = 1e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 2230 ATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGG 2289 |||||| || |||| | ||| | | ||| |||||||| |||||||| ||||| ||| Sbjct 13156 ATCACACCAAATGGTCTGAAAATAGCACCTGTGAGATCCAGCTGACCTGCTCTGTGGAGA 13215 Query 2290 ATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTG--GGCAAGACGCTTCTACGCGA 2347 |||| ||||| ||| |||| |||| ||| ||| ||| || || | ||| || Sbjct 13216 ATCCAAATGATAACGTCTCATTCAGGTGGCAGG--TTGCAGGAAAACCATTTCATAATGA 13273 Query 2348 GCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCAT 2407 | || ||| | | ||||||||||||| || | |||||| ||| |||||| ||||| Sbjct 13274 AGCAAATCTCTCTATATCCTGGGACCCCAAGAGCTTCAGTGAAAAGATCTACACCTGCAT 13333 Query 2408 CGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 || || || |||| |||||| | || | | | ||||| | | ||| Sbjct 13334 AGCTGAGAATCCTGTCAGCAATTTATCCTCCTCTGTCTCTGACAAGA 13380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622697916498840