Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2112 93.3 8e-14 seq27981 87.8 3e-12 >seq2112 Length=273871 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 175462 GGGTGGTGGCCTTTGCTGCTGTTGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 175521 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 175522 TCTGGCTAAAG-AAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 175580 Query 25999 AGGGACGA 26006 || || || Sbjct 175581 AGAGATGA 175588 >seq27981 Length=93525 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 ||||||||||||| || ||||| |||||||| || ||||| ||||| | || |||| Sbjct 21286 TGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 21227 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 21226 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 21168 Query 26002 GACGAGG 26008 ||||||| Sbjct 21167 GACGAGG 21161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919124682989760