Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5802 154 1e-31 seq2798 122 6e-22 seq6866 102 5e-16 seq2775 89.7 3e-12 seq412565 87.8 1e-11 seq43911 87.8 1e-11 >seq5802 Length=387644 Score = 154 bits (170), Expect = 1e-31 Identities = 410/610 (67%), Gaps = 30/610 (5%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAA--A 474381 || ||||| |||| |||||| | || || || || || | ||| ||| | | | Sbjct 259081 GACTTGCAGTTGGCATTGATCTTGGCACCAC---CAATTCT-----TGTGTGGGAGAGCA 259132 Query 474382 TGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTC 474441 ||| || || |||||||||||||| || || || || |||| || ||| |||||| | Sbjct 259133 TGGAAAGGTGGAAATAATTGCCAACGATCAGGGGAACTGAACGACCCCAAGCTATGTTGC 259192 Query 474442 TTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 |||||| | || ||||| | || || |||||||| || | | || | || |||| Sbjct 259193 CTTTACTAATACCGAACAATTGATCGGTGATGCTGCAAAGAACCTAG-TTCAATGAATCT 259251 Query 474502 TGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGT 474561 ||||| |||||||||| ||| | | ||||| | ||||||||| | ||| Sbjct 259252 CACCAATACAGTTTTTGATGCCAAACAACTTATTGGATAAAGATTTGATGATGCTGTTGT 259311 Query 474562 CCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT 474621 ||| || |||||| |||||||| || | |||| |||| || ||| | ||| | | Sbjct 259312 CCAGTCCGATATGAAACATTGGCCCTTCATGGTGGCGAATGATGCTGGCAGACCTAAGGT 259371 Query 474622 AGAAG--CAATACACGCAGGTGAAACTAAACAATTTT---CACC---GGAACAAATTTCT 474673 ||| | |||| | || || || ||| | |||| |||| ||| | || || Sbjct 259372 TTAAGTAGAGTACAAG--GGAGAGAC-AAAGAGTTTTTGACACCTCTGGAGGAGATGTCA 259428 Query 474674 TCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCT-CATATCTTGGACAAGA-AGTAA 474731 || ||||| | | || ||||| ||| | | || | | || ||||| |||| || | Sbjct 259429 TCCATGGTCCTGACAAAGATGAAGGAAATCAC-AGATGCCTACCTTGG-GAAGACTGTTA 259486 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 | |||| || | || || || || || |||| ||| ||||| ||| || || |||| Sbjct 259487 CCAATGCTGTTGTCACAGTACCTGCCTACTTTAGTGACTCTCAGTATCAGGCTACCAAAG 259546 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 || | |||| ||||| ||||| | ||| | | || || ||||||||||| || || | Sbjct 259547 ATACTGGAACTATTGCTGGTCTCATTGTACTTAGAATCATCAATGAACCAACTGCTGCTG 259606 Query 474852 CACTTGCTTATGGTCTTGATAAGAA-TTCTGA-CAAAGAAGTAAATGTTTTAATCTTTGA 474909 | |||| ||||| | || || || | ||| || ||| |||||| | |||||||| Sbjct 259607 CTATTGCCTATGGCTTAGACAAAAAGGTTTGAGCAGAGA--GAAATGTGCTGATCTTTGA 259664 Query 474910 TTGTGGAGGT 474919 || |||||| Sbjct 259665 TTTAGGAGGT 259674 >seq2798 Length=445656 Score = 122 bits (134), Expect = 6e-22 Identities = 327/494 (66%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||||||||| || || | || || || || || | Sbjct 156048 GGCAAGGTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 156107 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | || || || ||||| || || | || | || ||||| Sbjct 156108 TTCACAGACACCGAGCGGCTCATCGGTGATGCGGCCAAGAACCAGGTAGCCATGAATCCC 156167 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 156168 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCTGTCGTG 156227 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | ||||||||| | || || || | || || || || | || Sbjct 156228 CAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCCAAGGTA 156287 Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | | || ||| |||| ||| |||| || || |||| ||||| ||||| Sbjct 156288 -ATGGTGTCCTACAAAGGGGAAAAGAAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 156346 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCA 474739 | | || ||||| | || || ||| | | |||| | | | || || |||| Sbjct 156347 ACTGACTAAGATGAAGGAGACTGCTGAG--GCTTTTTTGGGCTACACTGTCACCAATGCT 156404 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || || ||||| ||||| || || ||||| |||||||| || || || || ||||| || Sbjct 156405 GTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGT 156464 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 || |||||||| ||||| || | ||||| |||||||| || || || || |||| Sbjct 156465 GTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCTACTGCTGCTGCCATTGCC 156524 Query 474860 TATGGTCTTGATAA 474873 ||||| | ||||| Sbjct 156525 TATGGCTTAGATAA 156538 >seq6866 Length=583421 Score = 102 bits (112), Expect = 5e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| ||| | Sbjct 72843 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCCCGT 72784 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 72783 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 72724 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 72723 GCTGTGGATAA 72713 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || || |||||| | ||| | || | || || Sbjct 75143 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAA 75084 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||||||||||||||| || || || |||| || ||| ||||| | ||||| Sbjct 75083 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 75024 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || |||| | || || |||||||| || | |||| ||| |||||| || Sbjct 75023 TGATACCGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCTACCAA 74964 Query 474508 TACTATTTTTG 474518 || |||||| Sbjct 74963 CACGGTTTTTG 74953 >seq2775 Length=875267 Score = 89.7 bits (98), Expect = 3e-12 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 ||||||||||| || ||| |||| ||| || || |||| | ||| | ||||| Sbjct 378400 ACAAGATGAAGAGTGGACTC-CTTTTGAATG-TTGTAGTCAGACAAAGTACGTCCATCTT 378343 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | |||||||| | |||||| || || | ||| || |||||||||||||||||||| | | Sbjct 378342 CCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATTCT 378283 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTAATAGT 480739 | ||||| || ||| ||| || ||||| || | ||| || || || || || Sbjct 378282 GGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGA--CCTCGAGAGTGATGGT 378225 Query 480740 TTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| || ||||| || Sbjct 378224 CTTCCCCGTCAGAGTCTTCACAAAAATCTG 378195 >seq412565 Length=258 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 94 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 153 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 154 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 206 >seq43911 Length=16071 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 7057 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 6998 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 6997 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 6945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3232268530697492