Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq14098 387 2e-102 seq47747 168 8e-37 seq9859 98.7 1e-15 seq16125 95.1 1e-14 >seq14098 Length=692335 Score = 387 bits (428), Expect = 2e-102 Identities = 681/987 (69%), Gaps = 15/987 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 228188 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 228247 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| ||| | ||||| || ||| || | ||||| ||||| || Sbjct 228248 AAACAAGTGGTGCACGT---GTAACAGCCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 228304 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 228305 GGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 228364 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || ||||||| || | Sbjct 228365 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACATGTCGTACTTATG 228424 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || |||| || | ||| | |||||||| || | || Sbjct 228425 GCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 228484 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | || Sbjct 228485 GTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 228544 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || ||||| || || | ||| | Sbjct 228545 CACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGCCTGAAAAGAGAGGTGT 228604 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || |||| | || | ||| ||||| | | Sbjct 228605 TTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACCT 228663 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || || | |||||| | ||||| |||| ||| Sbjct 228664 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAAGTTGT 228723 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | | | || |||| | |||| || || ||||| || || | ||||| | Sbjct 228724 TCTCGCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 228783 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | ||||||| ||||||||| | || ||| | || ||||| || Sbjct 228784 CCATACCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCATCTGGTAGAGGTCATGCA 228843 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | || Sbjct 228844 TGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGAC 228903 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA---CCACCGCCAGAAAGAA-- 160825 ||||||||||||| ||| ||| || || ||| || | | | ||||||||| | Sbjct 228904 TGGCCACAAAGACATTACTGAAGCAGGATGAGATGCCAATAGCTGCAGCCAGAAAGGATT 228963 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 | ||| || ||| ||||||||| | ||||| | ||||||||| |||||||| Sbjct 228964 CCTCTGAT-----TTTGTGTCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGC 229018 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| || Sbjct 229019 CCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGG 229078 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | ||| || ||| || | | | | || || ||| ||||||| ||| | Sbjct 229079 AAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGA 229138 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 | ||||||| | |||||||| || || Sbjct 229139 AGCACAATCACCAGTCATGTTTATGTA 229165 >seq47747 Length=36283 Score = 168 bits (186), Expect = 8e-37 Identities = 224/311 (72%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 5857 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 5798 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || ||||||| |||||||||||| || || | |||||||| ||| ||| Sbjct 5797 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 5738 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || || || | || || || | ||| || |||||||| || ||||||||| Sbjct 5737 AGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 5678 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 5677 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 5618 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| |||||||| | ||||| || ||||||||||| ||| Sbjct 5617 ACTTCCTGGGGATTTTGCAGAGAACATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 5558 Query 168453 TCATCTTGAGT 168463 |||| || || Sbjct 5557 ACATCCTGGGT 5547 Score = 123 bits (136), Expect = 3e-23 Identities = 162/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 8442 GTTTCCCTGTA-GTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 8387 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 8386 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 8327 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || | ||||||||| | || Sbjct 8326 GGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACCCAGAGACCTTCCAGGAGAT 8267 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 8266 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 8226 >seq9859 Length=187512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || ||||| || || || || |||||| || |||||||||| ||| |||| Sbjct 60630 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAAGTCCCCGGC 60686 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| || || || | || |||||| | ||| | || || | Sbjct 60687 TCCGTAAATGCAGATGGCCCGCTGATGGATTCCAGAGCAAGGTGCGTAAGGTGCCCCCAT 60746 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || || |||| | |||||||| || | |||||| || || |||||| || Sbjct 60747 GCTAACATCTCCCTCGTGGCCTTGCCACTTGACCAGCCTGGCGATGGCAGTCATGTCTGA 60806 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 ||| || ||| | |||||| | || || | | || |||||| ||||| Sbjct 60807 AATGTGATACTTGGAGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 60866 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| |||||||| |||||||| || ||||| || | |||||| || Sbjct 60867 GGCCCAGAGGTGTTCATCGGGGCTATAGGTGTCTTTGGCCCATTCAAT 60914 >seq16125 Length=72792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 |||||| | |||| | | ||||| || |||| |||| || |||| |||||| | Sbjct 52569 TTGTTTTTGTCTACTTCCTTCAGATACTTAGCTAGCTCACTGGGAGAGTTATAATCTTCC 52510 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 ||||| || |||| | || |||||| || || ||||| |||| || || || || ||| Sbjct 52509 ACATGAATGAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGACGGCCCCAAA 52450 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390 || | || || | | || | || | ||||| |||||||| |||||| || || Sbjct 52449 ACAACAGGCACAGAGCCAGCCAGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTG 52390 Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 || |||||||||||||| | | ||| || || || Sbjct 52389 TGGATTGAGTTTTCAAAGGAAAGATAAAATTTGCA 52355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571178752592040