Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4729 86.0 2e-11 >seq4729 Length=271507 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||| ||||| Sbjct 49257 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGACCCCCCATGGCATG 49198 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| | || || || || || Sbjct 49197 GAAGAAGAACTC-AGTGGGCGTGAGGCCGGCCAGGTAGGAGTTTTCCACAAAGCCTCGGC 49139 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||||| || || | || ||| Sbjct 49138 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATG 49079 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || || |||||||| || Sbjct 49078 GGATCCGCTTGCCCTCCACATTCTGCTGCCC 49048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1456030360547323