Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4413 84.2 3e-11 >seq4413 Length=142471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 211/304 (69%), Gaps = 29/304 (10%) Strand=Plus/Minus Query 107276 tatatattgatatatgtaaatttttatctaatattagtatttcattataattaaatatat 107335 ||||||| |||| | ||||| | ||| ||| || ||| | |||||| || |||||| Sbjct 125373 TATATATATATATTTATAAATATATATATAAATATATTATAT-ATTATA--TATATATAT 125317 Query 107336 ttttgtataatattggctgtaatttattaaatattaaattatcatctatttCTAAGGTAT 107395 | | ||||||| | | |||| ||||| |||| | | ||| || | ||| | Sbjct 125316 TATA-TATAATAATATATATAATATATTATATATAATAATAT-----ATATATAA----T 125267 Query 107396 CATCTTTGatataataaattatataaagtattaattcatttctcattcga-atattatta 107454 || | | ||||||||| ||||||| ||| || || | | || | ||| ||||| Sbjct 125266 AATATAT-ATATAATAA--TATATAATATAT--AT--ATATATAATAATATATAATATTA 125214 Query 107455 ataatatttaaatatatagattctggcatataatctttatgtg-ataatatacatctaat 107513 |||||||| |||||||| || | ||||||| | ||| | |||||||| || |||| Sbjct 125213 ATAATATTATAATATATA-ATAAT---ATATAATATATATATATATAATATA-ATATAAT 125159 Query 107514 atatgatataGA-TGGATTTTCATTTAGAAATTTATTTATTTTATAATATATTGAATAAT 107572 |||| ||||| | | || || || || | | || |||| ||||||||||| ||||| Sbjct 125158 ATATAATATATAATATATATT-ATATAATATATAATATATTATATAATATATTATATAAT 125100 Query 107573 CTAT 107576 ||| Sbjct 125099 ATAT 125096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777939374992680