Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7597 122 7e-23 seq9815 114 1e-20 seq2775 96.9 3e-15 seq5931 93.3 3e-14 seq308 82.4 6e-11 >seq7597 Length=568930 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || || || ||||| || ||||| || || | Sbjct 230318 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 230259 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 230258 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 230199 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || |||||| | || | |||||| | || || Sbjct 230198 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 230139 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 230138 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 230092 >seq9815 Length=175929 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| | |||||| ||||| || ||||||||||| || || | | || || ||| || Sbjct 59807 CACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTC 59748 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| ||||||||| | |||| ||||||||| || || ||||| || ||||| || || Sbjct 59747 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTG 59688 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || || ||| |||||| || || || | || || || ||||| || || || Sbjct 59687 GATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGATGGTCTT 59628 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | ||| || || || |||||||| || Sbjct 59627 CCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 59595 >seq2775 Length=875267 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 378404 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 378345 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||| |||| | |||| ||||||||| || || ||||| || || || | Sbjct 378344 TTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATT 378285 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | | || || ||||| || || Sbjct 378284 CTGGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGTGATGGT 378225 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | || || ||||| |||||||| || Sbjct 378224 CTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 378189 >seq5931 Length=560455 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| | | | | | || || ||| Sbjct 199287 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGT-AGCAGACAAAGTACGTCCATC 199345 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||||||| | |||| || |||||| | | ||||| || || || || Sbjct 199346 TTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAGGAATTCCTTCCTTATC 199405 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | || || |||||||| || || Sbjct 199406 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCACCTCAAGAGTGATGGT 199465 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || ||||| |||||||| || Sbjct 199466 CTTCCCTGTCAGGGTCTTCACAAAAATCTGCATCTT 199501 >seq308 Length=189498 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| |||| || ||||||||||| || || | || || ||| Sbjct 115906 CAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTC----AAAGTACGTCCATC 115961 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || ||||| || || || || Sbjct 115962 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 116021 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || || | || || | ||| | || || Sbjct 116022 CTGGATCTTGGCCTTTACATTTTCTTTTGTATCCGAGGGCTCCACCTTGAGAATGATGGT 116081 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | | ||| || || || |||||||| Sbjct 116082 CTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 116114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381288762637239