Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5802 187 2e-41 seq2798 187 2e-41 seq6866 125 5e-23 seq7000 109 4e-18 seq10770 89.7 4e-12 seq17479 86.0 5e-11 >seq5802 Length=387644 Score = 187 bits (206), Expect = 2e-41 Identities = 913/1431 (64%), Gaps = 59/1431 (4%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| || || ||||||||||| |||||| |||||||| || Sbjct 260523 TTATCCACAGCAGAGACATTGAGGATGCCATTGGCATCAGTATCAAAAGTGACTTCGATC 260464 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | | ||||| || || ||| | | ||| | || ||| || Sbjct 260463 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCAAGAAAGTTG 260404 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 ||||| || || | | | ||||| || ||| || || || ||| || || Sbjct 260403 TTATCCTTGGTCATGGTACACTCACCTTCATAAACCTGAATGAGCACACCAGGCTGGTTG 260344 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || || || || || || | |||| | | || |||||| || || || | || Sbjct 260343 TCAGAGTAGGTGGTGAA-AGTCTGCCTCTGCTTGGTAGGAATGGTGGTATTGTGCTTGAT 260285 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 | ||||| | |||||||| ||||| | | || ||||||||||||||||| | Sbjct 260284 GAGGACAGTCATGACTCCACCAGCAGTTTCAATTCAGAGGGAAAGAGGAGTGACATCCAA 260225 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 || | | | ||||| |||||| | | | |||| ||| ||||| || | ||| Sbjct 260224 CAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCTGACAA-AATGGCTGCCTGGACAGC 260166 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 |||||||||||||||| |||| || | | | | ||| |||| ||| ||| |||| Sbjct 260165 TGCACCATATGCAACAGTGTCATTGGGGCTGATGCTCTTATTCAGTTCTTTCCCACTGAA 260106 Query 281836 AAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | ||||||| ||| | ||| || || || | ||| || || || || |||| Sbjct 260105 GAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCCACCAAGACAA 260047 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCA 281953 | || || | ||| ||||| ||||| || | |||| | |||| || || |||| || Sbjct 260046 TATCGTGGATCTGAGATTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCA 259987 Query 281954 AGA--CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011 || ||| | |||||||| | | |||| || ||| ||| Sbjct 259986 GGATGCCA---CAGAACAAGTCAGCATTCAGTTTGTCAAATC-----------AGA---- 259945 Query 282012 CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG---TCGAAG 282068 | | |||||||| | | |||||| | ||| | || || | | |||| Sbjct 259944 ------AGTTGATTCCTTCATAGAGGAAATCAATCTTAATACTGGTCTGGGCGCTGGAAG 259891 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128 | || ||||||| |||||| | ||| | || | | || | | | || | || Sbjct 259890 A-GAGAGTGCAC--TTAGCAAGCTCAGAAGCAGGACAGAGGCAATGGACAGCCCT--CTT 259836 Query 282129 ATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTA--CA 282184 ||| | ||| | || | | ||| | |||||| | ||| | ||| | | Sbjct 259835 ATTCTCACTAATATACTTCTTGTGTTTGCACTTGAACTTGGCAATGAA--ATGGTTGCCC 259778 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | | ||| ||||| ||||| || ||| | ||||| ||| | ||| | | || | Sbjct 259777 ATGCCATTGTCAAAGTCTTCTCCAGACAAGTGAGTATCTCCAGCTATAGATTTGACCTCA 259718 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 || | |||||| |||| || | | | |||||| | ||||| || | |||||| Sbjct 259717 AAGATTCCATCCTCAATAGTGAGGATTGACACATCAAAA-TGCCACCTCCTAAATCAAAG 259659 Query 282305 ATAAGTACATTCATTTCTTTG-TCTTGG-TTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 || || ||||| | ||| || || ||||| || | ||||| |||| |||||||| Sbjct 259658 ATCAGCACATT--TCTCTCTGCTCAAACCTTTTTGTCTAAGCCATAGGCAATAGCAGCAG 259601 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 ||||||||||||| || ||||| | ||| | ||||||||||| |||| | |||||| | Sbjct 259600 CAGTTGGTTCATTGATGATTCTAAGTACAATGAGACCAGCAATAGTTCCAGTATCTTTGG 259541 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 | || || || || || |||| || ||||| || || | ||| |||| || || Sbjct 259540 TAGCCTGATACTGAGAGTCACTAAAGTAGGCAGGTACTGTGACAACAGCATTGGTAACAG 259481 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 || |||| || || || ||| ||||| || | | | ||| ||||| || | Sbjct 259480 TCTTCCCAAGGTAGGCATCTGTGATTTCCTTCATCTTTGTCAGGACCATGGATGACATCT 259421 Query 282543 GTTCTGGAG-----AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || ||| || | ||| | || | || ||||| || | ||| | Sbjct 259420 CCTCCAGAGGTGTCAAAAACTCTTTGTCTCTCCCTTGTACTCTACTTAAACCTTAGGTCT 259361 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657 | || |||| || | || ||||||| ||||||||| || || ||| || Sbjct 259360 GCCAGCATCATTCGCCACCATGAAGGGCCAATGTTTCATATCGGACTGGACAACAGCATC 259301 Query 282658 ATTAAAATCTCTA-CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG 282716 | | |||||| || ||||| | | |||| |||||||||| |||||||| |||| | || Sbjct 259300 A-TCAAATCTTTATCCAATAAGTTGTTTGGCATCAAAAACTGTATTGGTGAGATTCATTG 259242 Query 282717 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATG 282776 | || | | || || ||||| || |||| ||||| || | ||||| | |||||| Sbjct 259241 -AACTAGGTTCTTTGCAGCATCACCGATCAATTGTTCGGTATTAGTAAAGGCAACATAGC 259183 Query 282777 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827 ||| || || | || || ||||| || ||||| ||||| || || |||| Sbjct 259182 TTGGGGTCGTTCAGTTCCCCTGATCGTTGGCAATTATTTCCACCTTTCCAT 259132 >seq2798 Length=445656 Score = 187 bits (206), Expect = 2e-41 Identities = 705/1087 (65%), Gaps = 23/1087 (2%) Strand=Plus/Minus Query 281750 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 ||| ||| ||| ||||| |||| ||||| ||||| ||||| || ||||| || || | Sbjct 157122 CCATCAA-AATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCATCGGGGTTGATG 157064 Query 281810 GTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAAT 281868 | | || |||| |||||| || | | || || | | | |||||||| || Sbjct 157063 CTCTTGTTGAGTTCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA-ACCTTAGGGAT 157005 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 |||| || || || ||||| ||||| ||||| | | | |||||||| ||| | ||| Sbjct 157004 TCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTATCCATTTTGGCATC 156945 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTC 281988 | | | | || || || || || || | ||||||| ||||| ||| || ||||| Sbjct 156944 CCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCACACAGCTCTTC 156885 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 || ||||| || || || | || || ||||| ||||| | | || |||| | Sbjct 156884 AAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAAAGTGAGTCAATT 156827 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 || | | | || || ||| || || | | || || | || || || || | Sbjct 156826 TCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCTCGCAGGCGGTGCGC 156767 Query 282107 AGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 282162 | | | | || |||| | ||| |||| || | |||| ||| |||||||| Sbjct 156766 AACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGTTTCCTCTTGAA 156711 Query 282163 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 282222 ||||| ||| | | ||||| | || |||||||| || || ||||| | || | Sbjct 156710 CTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACCCAAGTGGGTGTC 156651 Query 282223 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATG 282282 || | || || | || | |||| ||||| || | | || | | |||||| Sbjct 156650 CCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACGGATACATCAAA 156591 Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGTTTTTATCA 282340 || || ||||||| |||||| || | |||| || | || || | || ||| | | | Sbjct 156590 TGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGACCTGCTTTATCT-A 156532 Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 || ||||| |||| ||||||||||| |||||||| |||||||| | ||||| ||||| Sbjct 156531 AG-CCATAGGCAATGGCAGCAGCAGTAGGTTCATTGATAATTCTTAGCACATTGAGACCT 156473 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 || || |||||||| || ||||| || | ||| || || || || || || || ||| Sbjct 156472 GCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGTAGGCTGGCACA 156413 Query 282461 GTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 || || || |||| || || | || | | |||| || || | ||||| ||| Sbjct 156412 GTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTCTCCTTCATCTTA 156353 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT--CATTTTGATATG 282578 | | | ||| || || |||| || ||| || | |||| || | |||| || | Sbjct 156352 GTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCCCCTTTG-TAGG 156295 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | || | | || || || | || || |||| || |||||| |||||||| Sbjct 156294 ACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGGCCAAAGTTTCATAT 156235 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 ||||||| || | |||||||| | ||| ||||| | ||||| |||||||| | || Sbjct 156234 CTGATTGCACGACAGGATCATTAAATTTTCTGCCAATCAGACGTTTGGCATCAAAGACAG 156175 Query 282699 TATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCT 282758 | || ||||| | || | || | ||||| ||||| || || || | || || | Sbjct 156174 TGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCACCGATGAGCCGCTCGGTGT 156115 Query 282759 CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAA 282818 |||| || | || || || || ||||| || || || ||||| || || || || | Sbjct 156114 CTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCA 156055 Query 282819 CTTTACC 282825 | || || Sbjct 156054 CCTTGCC 156048 >seq6866 Length=583421 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| |||||||| ||||| | ||| Sbjct 74159 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 74218 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || ||||| ||| Sbjct 74219 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAT 74278 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || |||| ||| |||| Sbjct 74279 GCAGGTACTGTAACAACAGCAT 74300 >seq7000 Length=770865 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 481666 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 481725 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 481726 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 481785 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 481786 GAAGCTTCTCATAAA 481800 >seq10770 Length=283643 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | || || Sbjct 105903 TGTCGTAGCTACCGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCCAAGTCAT 105844 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| ||||| ||| | || ||| ||||| || || ||||||||||| || || Sbjct 105843 TCATTACGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATTGGTAGAGCTGGCCG 105784 Query 131296 TGATGGA 131302 |||||| Sbjct 105783 AGATGGA 105777 >seq17479 Length=99570 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 282318 TTTCTTTGTCTTGGTTTTTA-TCAAGACCATACGCAAAAGCA-GCAGCAGTTGGTTCATT 282375 ||| ||||| || ||||||| || || | || | | | || || ||||| | ||||| Sbjct 3286 TTTTTTTGTTTTTGTTTTTAATCCAGGCGATG-GAATATGCCTGCTGCAGTAAGCTCATT 3344 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||| ||||||| || ||||||| ||| || | | ||||||||| ||||| || | || Sbjct 3345 AATGATTCTCAGAATATTAAGATCAGTGATGATCCATGCATCTTTGGTGGCCTGACACTG 3404 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||| || || || | ||||||||||| || || Sbjct 3405 TGAATCATTTAAGTAGGTTGGAACAGTAATTACTGC 3440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3699528449018454