Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq14098 251 8e-62 seq47747 201 1e-46 >seq14098 Length=692335 Score = 251 bits (278), Expect = 8e-62 Identities = 664/1004 (66%), Gaps = 15/1004 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 228172 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 228231 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || || | ||| || | || || | Sbjct 228232 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGT---AACAGCCAGTTCAAGTCACCAG 228288 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 228289 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 228348 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 228349 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 228408 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||||||||| | || | || || | || || || | || | ||||| | | Sbjct 228409 ACATGTCGTACTTAT-GGCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATA 228467 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 228468 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 228527 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| | | || | ||| || || ||| | || | ||| || || || Sbjct 228528 ATATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTG 228587 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||| | ||| | | ||| || | |||||| ||| |||| | | Sbjct 228588 CCTGAAAAGAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 228647 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | |||||| | | ||| ||||||| | | ||| ||| || || | Sbjct 228648 TTTCCATTCACGACCTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATT 228704 Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || |||| |||| ||| ||| ||| |||| | || || || || Sbjct 228705 CTCTCCGTTTCTAAGTTGTTCTCGCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGG 228764 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 228765 TTGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 228824 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | ||| || || || | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 228825 ATCTGGTAGAGGTCATGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATAC 228884 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || |||||||||| | | |||| ||||||||||| ||| || || || || || Sbjct 228885 ACCACGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGATGAGATGCCAATA 228944 Query 162835 ACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | ||| |||| || || | ||| | || ||||| | || || | ||||| Sbjct 228945 GCTG-CAGCCAGAAAGGAT-TCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTCT 229002 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 229003 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 229062 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || ||||| ||||| || ||| || | || ||| || |||| Sbjct 229063 TAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 229122 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | | | || | ||||| || | |||||||| | |||| Sbjct 229123 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 229166 >seq47747 Length=36283 Score = 201 bits (222), Expect = 1e-46 Identities = 221/294 (75%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 5862 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 5803 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || ||||||| |||||| ||||| || || | || || || ||| Sbjct 5802 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 5743 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || || || | | ||||||||| | ||||||||| ||||| || || | Sbjct 5742 GTCCCAGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 5683 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 5682 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 5623 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | |||||||| | | |||| ||||| ||||||||||||||||||||||||| Sbjct 5622 TCAAAACTTCCTGGGGATTTTGCAGAGAACATCTTAAAGAAGCAGGTGTGTTCA 5569 Score = 116 bits (128), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 8445 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 8388 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| || |||||||| || || Sbjct 8387 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 8329 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || | || ||||| | Sbjct 8328 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACCCAGAGACCTTCCAGGAG 8269 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 8268 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 8209 Query 171743 TCATAGTG 171750 | |||||| Sbjct 8208 TTATAGTG 8201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572378860958400