Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq39760 109 5e-19 seq7597 102 8e-17 seq9815 98.7 9e-16 seq2112 82.4 7e-11 >seq39760 Length=42403 Score = 109 bits (120), Expect = 5e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | |||||||||||||||||| ||| |||||| || ||||| ||| Sbjct 35698 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 35757 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | |||||| ||||||||||||| |||||||| Sbjct 35758 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCGGTCTC 35807 >seq7597 Length=568930 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 229829 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCA 229770 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| ||||||||||| || || || || | Sbjct 229769 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACA 229710 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | ||||||||||| || |||||| Sbjct 229709 TTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTTAGGGTTTTT 229650 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 229649 ACAAAGATCTGCAT 229636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 230310 CAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 230251 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || ||||| || ||||| || Sbjct 230250 CCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 230191 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 230190 CTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 230131 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||| |||| || || | ||| |||||||| Sbjct 230130 GATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 230092 >seq9815 Length=175929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || |||||| |||||| || || || || | | Sbjct 59791 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTGCCAGCA 59732 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || || || ||||| || ||||||||||| || || || | Sbjct 59731 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 59672 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | |||||| || |||| || | || || || ||||| || || Sbjct 59671 TTTTCTATTGTATCCGACGGCTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTC 59612 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 59611 ACGAAAATCTGCAT 59598 >seq2112 Length=273871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 ||||| ||||| |||||| | |||||||| | ||||| ||||| ||||| || |||||| Sbjct 186535 AATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGAAA 186594 Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278 ||||| | ||||||| |||| || Sbjct 186595 CGAGTTGCAGAGTATCAGCGTTT 186617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471623588902440