Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq9815 89.7 5e-13 >seq9815 Length=175929 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || || || | || || || | ||||| |||| ||||| || Sbjct 59594 CAAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGA-GC 59652 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | || |||| || || | ||||| || || |||||||| || || || || | Sbjct 59653 CGTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTG 59712 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 | ||||||||||| || | | ||||| ||||| ||||||| | | | | || | Sbjct 59713 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACTTTGTCTGACT 59772 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||| |||||||| || ||||| ||||| ||||||||||| Sbjct 59773 ACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTAAGA 59813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440436603941280