Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq47747 273 3e-68 seq28392 154 2e-32 seq2560 152 6e-32 seq43242 134 2e-26 seq61072 125 8e-24 seq12021 109 6e-19 >seq47747 Length=36283 Score = 273 bits (302), Expect = 3e-68 Identities = 252/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| |||||||||||| || | |||||||||||| || || || | | ||| || ||| Sbjct 5541 GTGCTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGTTCTCTG 5600 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 5601 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 5660 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 5661 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 5720 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| ||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 5721 ATAAATATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 5780 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 5781 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 5840 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 5841 ATAGCCTGCCTCACTCTCT 5859 Score = 206 bits (228), Expect = 3e-48 Identities = 212/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| | ||| || ||||| || ||||| || Sbjct 8180 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 8239 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | || ||||||| ||||| Sbjct 8240 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCAGGGATTGAG 8299 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 8300 AACAGTACCGAGATCGTCTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 8359 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 8360 ATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 8419 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 8420 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 8456 >seq28392 Length=124393 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 6077 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 6018 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || || | Sbjct 6017 TGCCACAGGCTGAGAACCAC------------GGCCCTGACATCAAGGAGCACGTGAATT 5970 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| || || |||||||||| ||| Sbjct 5969 CCCTGGGGGAGAAGCTGAAGACCCTCAGGCTGCGGCTGCGGCGCTGT 5923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 3750 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3691 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||| |||||| || ||| Sbjct 3690 TAGAAACCTACGTGACAATGAAGATG 3665 >seq2560 Length=892758 Score = 152 bits (168), Expect = 6e-32 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 722494 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 722435 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || ||||| || | Sbjct 722434 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATT 722375 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| ||||| || || || |||||| || || || | Sbjct 722374 CACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGA 722315 Query 147162 GGGG 147165 |||| Sbjct 722314 GGGG 722311 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 720109 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTTG 720050 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||| | ||| ||||| || ||||||| Sbjct 720049 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAATTTTCACTCCC 719990 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 719989 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 719957 >seq43242 Length=2395 Score = 134 bits (148), Expect = 2e-26 Identities = 276/409 (67%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| ||||| | | |||||| Sbjct 868 GTATTCCCTGGTGTTCACGATTGGTCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 809 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||||||||| || ||| Sbjct 808 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 749 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 748 TGTGCTCTTCCTGTTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 695 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||| |||||||||||| | || || | || ||| |||| Sbjct 694 GTGGGTTTTTGGCCACTGCATGTGTAAGTTACTCTCCGGGCTCTATTACATGGGTTTGTA 635 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||| ||||| | ||| |||| || || |||| |||| Sbjct 634 CAGCGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATTGTCCACGC 575 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || ||| || ||||| || | |||| Sbjct 574 TGTGTTTGCCCTTCGAGCCCGGACAGTCACTTTTGGTATCATCACCAGCATCTTCACCTG 515 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCC 9018 | ||||| ||| | | | || | || || ||| ||||| |||| ||| Sbjct 514 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCC 466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 7/120 (6%) Strand=Plus/Minus Query 9296 GGCCAGACTGTGAAGCGCGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGA 9352 |||| |||||||| || | |||| | ||||| |||| | ||||| | || ||| Sbjct 181 GGCC-GACTGTGA---GCAGAGCAGACAGCTGGACCTGGCTATGCTGGTGACAGAAGTGA 126 Query 9353 TCGCCTGCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||| ||| |||||||||||||||||||| ||||| || ||||| || || | ||||| Sbjct 125 TCGCCTACACGCACTGCTGCGTCAACCCCGTGATCTATGCCTTTGTTGGTGAGAGGTTCC 66 >seq61072 Length=12731 Score = 125 bits (138), Expect = 8e-24 Identities = 274/409 (67%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| ||||| | | |||||| Sbjct 1427 GTATTCCCTGGTGTTCACGATTGGTCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 1486 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| || ||||||||||||| |||| ||||||||||| || ||| Sbjct 1487 AAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 1546 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 1547 TGTGCTCTTCCTGTTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 1600 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 1601 GTGGGTTTTTGGCCACCGCATGTGTAAGTTACTCTCCGGGCTCTATTACATGGGTTTGTA 1660 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||| || || | || |||| Sbjct 1661 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTCCACGC 1720 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || ||| || ||||| || | |||| Sbjct 1721 TGTGTTTGCCCTTCGAGCCCGGACAGTCACTTTTGGTATCGTCACCAGCATCTTCACCTG 1780 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCC 9018 | ||||| ||| | | | || | || || ||| ||||| |||| ||| Sbjct 1781 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCC 1829 >seq12021 Length=99980 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 6775 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 6716 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 6715 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 6656 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| || || || |||||| ||| Sbjct 6655 CCTCGTCTTCCTCTTCACACTGCCATTCTGGATTGACT 6618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577381951245600