Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7597 141 9e-29 seq9815 107 2e-18 seq10000 84.2 2e-11 seq2775 84.2 2e-11 seq5931 82.4 8e-11 >seq7597 Length=568930 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || ||||||||||| Sbjct 229862 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 229803 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||||||||| ||||| | |||||| || || || Sbjct 229802 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 229743 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||||||||| || || ||||| || | ||||| | ||||| Sbjct 229742 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 229683 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||||||||| |||| ||||| || || || |||||| Sbjct 229682 TCCAGAGTGATGGTTTTACCAGTTAGGGTTTTTACAAAGATCTGCATT 229635 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||||||| Sbjct 230090 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 230031 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 230030 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 229971 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | ||||| | ||||| Sbjct 229970 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 229911 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 229910 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 229864 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || | ||| || || || || || || ||||||||||| Sbjct 230318 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 230259 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 230258 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 230199 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | ||||| | ||||| Sbjct 230198 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 230139 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || ||||| || ||||| Sbjct 230138 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 230092 >seq9815 Length=175929 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 59815 AGTCTTAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 59757 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||| || || || || ||||| Sbjct 59756 CCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 59697 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 ||| || || || || || || || | ||| || |||| || || |||||||| Sbjct 59696 TTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGACGGCTCGACCTCGAGAGT 59637 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || |||||||| ||||| ||| Sbjct 59636 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 59594 >seq10000 Length=929206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || || || || |||||||| || | Sbjct 685750 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 685691 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| || | |||||||| || || || Sbjct 685690 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 685631 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 685630 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 685571 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 685570 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 685520 >seq2775 Length=875267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 378409 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 378351 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || |||| ||||| |||| | ||||| || || || || ||||| Sbjct 378350 TCCATCTTCCAGTTGCTTGCAAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 378291 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || | || || || || || || | || || || | | || |||||||| Sbjct 378290 CTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCGAGGGCTTGACCTCGAGAGT 378231 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||| || || ||||| ||||| ||| Sbjct 378230 GATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 378188 >seq5931 Length=560455 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/222 (68%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| || || || ||||| |||||||||||||||||| | ||| || | Sbjct 199282 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGCAGACAA-AGTACGT 199340 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| || || |||| | ||||| | | || || ||||| Sbjct 199341 CCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCCTTGCTGGTAAGAAGGAATTCCTTCC 199400 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||| || || | ||||| || ||||| Sbjct 199401 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCCACCTCAAGAGTG 199460 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || || ||||| ||||| ||| Sbjct 199461 ATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATCTTG 199502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500109538411080