Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq27981 125 1e-23 seq39760 123 3e-23 seq2343 111 2e-19 seq2112 104 3e-17 >seq27981 Length=93525 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 21161 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 21220 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 21221 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 21280 Query 39759 CAAC 39762 | || Sbjct 21281 CTAC 21284 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 23104 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 23163 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||| ||||| || || ||| Sbjct 23164 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 23209 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 24247 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 24306 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||| ||||| || || ||| Sbjct 24307 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 24352 >seq39760 Length=42403 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 28010 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 28069 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 28070 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 28129 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 28130 TTTCTTATACCAT 28142 >seq2343 Length=226264 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| || ||||| ||||| || || || | ||| ||||| ||||| | Sbjct 8931 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCA 8990 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| | || ||||| || |||| Sbjct 8991 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 9050 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 9051 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 9101 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| ||||||||||| || ||| Sbjct 4641 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTTTCAGAAAGAAGGTTG 4700 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | |||||||| | | || | ||||||| Sbjct 4701 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 4760 Query 70111 ATATGCTGAGGTCGTTC 70127 || || || |||| ||| Sbjct 4761 ATGTGTTGTGGTCTTTC 4777 >seq2112 Length=273871 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 175588 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 175529 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || ||||| || || ||||| || Sbjct 175528 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGCC 175469 Query 39761 AC 39762 || Sbjct 175468 AC 175467 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||||| | |||||||||||||||| ||||||||||| || |||||||| || || | Sbjct 171062 AAAATCT---CACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 171006 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 | || |||||||| || || || | | | | || ||||||| | | ||| |||| Sbjct 171005 CGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTG 170946 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 170945 ATAAATCAAC 170936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679720479721560