Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq27981 116 3e-21 seq2112 89.7 4e-13 seq790 86.0 5e-12 >seq27981 Length=93525 Score = 116 bits (128), Expect = 3e-21 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| || ||||| ||||| || |||||||| Sbjct 23220 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 23162 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 23161 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 23104 Score = 116 bits (128), Expect = 3e-21 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| || ||||| ||||| || |||||||| Sbjct 24363 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 24305 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 24304 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 24247 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 21296 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 21237 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 21236 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 21181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| ||||||||||||||||| |||| || || || ||||| ||| Sbjct 19690 GTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTT 19631 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605 || || | || || || |||||| | ||||| || ||| || ||| || ||| Sbjct 19630 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCC 19571 Query 44606 TTTACTACGGATGAAGATTTCTAATTAATCAGAAAACTTG 44645 ||||| ||||| || |||||| | | | ||| || || Sbjct 19570 TTTACCTTGGATGCCGACTTCTAAGTGACCTGAAGACATG 19531 >seq2112 Length=273871 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 186533 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 186592 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| |||||||| Sbjct 186593 AACGAGTTGCAGAGTATCAGCG 186614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| |||||||||| Sbjct 165996 TTTGTCATCTTTCCAATCCAGTACCCTGACATCTGGAAAATGTATAAACAAGCACAGGCA 166055 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 166056 TCCTTCTGGACAGCAGAAGAGGT 166078 >seq790 Length=204519 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || || || ||||| ||||| Sbjct 50078 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATTTGCAAGCAGAGAGGG 50137 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 50138 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 50197 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 50198 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 50239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393400709109895