Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_028812.1 Length=58546 Score E Sequences producing significant alignments: (Bits) Value seq831383 93.3 2e-14 seq836623 82.4 3e-11 >seq831383 Length=1945 Score = 93.3 bits (102), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 24694 CCCCTATCGAGTCACGATGCCGAACTGCAATGCTTCGACAGCGCCTTTATTCCAGTCGGT 24753 ||| |||||||| | ||||||||| ||||| | |||||| | | |||||||| | Sbjct 1630 CCCTTATCGAGTGATGATGCCGAATTGCAAAGATTCGACGTTGTTCTGGTTCCAGTCACT 1571 Query 24754 ATTACCCGGAGTTTGTTCGTGGGTAACTTGGTAGTATTTATAGTCTTCGGTCAATGGTAC 24813 ||||| | ||| ||| | | || || || || || ||||| | || || Sbjct 1570 TCCGCCCGGCGCTTGCTCGAACGATGCCTGATAATACTTGTACGACTCGGTGAGCGGCAC 1511 Query 24814 TTGGACTTCTTTCTCAGAACCCCCGTCAGTCTGGATCACCATACCGAGTTTACGGTCGTC 24873 || | ||| || | ||| || || || | || ||||| ||||||||||| || || Sbjct 1510 CTGAATTTCAGTCGGCGTACCGCCTTCCGTGTTGACCACCAGCCCGAGTTTACGATCATC 1451 Query 24874 TAAGTCCCCTTTACGGGCATACGCAATCACCGACACGCCGAAAACC---TTATTGTT 24927 | ||| ||||||||||| ||||| || || |||||| |||| | | |||||||| Sbjct 1450 AAGGTCGCCTTTACGGGCGTACGCGATGACGGACACGGCGAAGATCTGGTTATTGTT 1394 >seq836623 Length=4079 Score = 82.4 bits (90), Expect = 3e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 31105 AGTCCGCGCGTCTTCGGGTCAGAAATCTTCAAAACGTCTCCCGGTTGTACTCGCCATGCT 31164 || |||||| ||||||||| | |||| ||||| ||||| || || |||||| Sbjct 854 AGGCCGCGCTGTTTCGGGTCACGCACTTTCAGCACGTCGCCCGGCTGCACGTTCCATGCC 795 Query 31165 CGACGGTCACAAACTAAGGTGAACCGGCGGACGTTAGTAGACGCAACACGTAAGTCTCTC 31224 || |||||||| | | |||||| ||||||||||| |||||||| | || ||||| | | Sbjct 794 CGGCGGTCACAGATCACGGTGAAACGGCGGACGTTGGTAGACGCGGCGCGCAAGTCACGC 735 Query 31225 TCTGC 31229 | ||| Sbjct 734 TGTGC 730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185364296580584