Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq47747 187 2e-42 seq30230 105 5e-18 seq833888 104 2e-17 >seq47747 Length=36283 Score = 187 bits (206), Expect = 2e-42 Identities = 212/282 (75%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 1250 TTCTATTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAG 1308 |||| ||||| |||| | | ||| || || |||||| | ||||| |||||||||||| Sbjct 5582 TTCT-TTAAGATGTTCTCTGCAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAA 5640 Query 1309 TTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTC 1368 | || || |||||||||||||||| ||| | || | |||| |||||||| || | Sbjct 5641 TCAAGGCTGTAAGCCCAGAAAACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCC 5700 Query 1369 AGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAA 1428 |||| || ||||| || || || || || || |||| ||||| ||| |||| || | Sbjct 5701 AGCCTGCCTACAAGGACAAGATAAATATCACCCAGCTGGGACTCATGAACTCAACCATTA 5760 Query 1429 CCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTG 1488 |||||||||| || || ||||| ||||| | ||| |||||||| | ||||| || |||| Sbjct 5761 CCTTCTGGAATACCACCTTGGAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTG 5820 Query 1489 GATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTTG 1530 | ||||| ||||| |||||||||| || || || || |||| Sbjct 5821 GTTCTGGAAAGATCTCAGGAATAGCCTGCCTCACTCTCTTTG 5862 >seq30230 Length=201725 Score = 105 bits (116), Expect = 5e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 || ||| | |||||||| ||||| |||||||| |||| || | || ||||||||| || Sbjct 197757 CTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGACACGTTTTTTCCAGAAATTGAT 197816 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 | ||||| |||| || | |||| ||||||| |||| |||| | || || ||| Sbjct 197817 TTGGAAAAATATAAACTTCTCCCAGAATATCCAGGTATTCCTTCTGATATCCAGGAGGAA 197876 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 || || |||| ||||||||||| |||||||||| || | |||| Sbjct 197877 AAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 197922 >seq833888 Length=2378 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 433 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 374 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| || || |||||||| | | || | |||| || |||| | Sbjct 373 TTCGGAGGGGTCATGTGCGTAGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 314 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 313 ATCGCCCTGTGGATGACCGA 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410247843860956