Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9815 118 7e-22 seq7597 100 2e-16 seq308 95.1 8e-15 seq2775 91.5 1e-13 seq10000 89.7 3e-13 seq5931 87.8 1e-12 >seq9815 Length=175929 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| || || ||||||||||| || || | Sbjct 59595 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCG 59654 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || |||||||| | || || || Sbjct 59655 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 59714 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | || ||||| || ||| Sbjct 59715 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTAC 59774 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| ||||| Sbjct 59775 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTAAG 59812 >seq7597 Length=568930 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || || ||||| |||||||| || || || | | Sbjct 229635 AATGCAGATCTTTGTAAAAACCCTAACTGGTAAAACCATCACTCTGGAGGTGGAGCCTAG 229694 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || || |||||||| | || ||||| || Sbjct 229695 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCA 229754 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| |||||||| |||||||| | ||||| | || ||||| Sbjct 229755 GCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 229814 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 229815 CATCCAGAAAGAGTCCAC 229832 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || || || ||| Sbjct 229864 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 229923 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || ||||| || Sbjct 229924 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGACCA 229982 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| |||||||| | ||||| | ||| ||||| Sbjct 229983 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 230042 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 230043 CATCCAGAAAGAGTCCAC 230060 >seq308 Length=189498 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| | ||| || || |||| |||| | || || || || Sbjct 116114 ATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTGGAGCCCTCG 116055 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| |||| || || || || ||||| | || || || || Sbjct 116054 GATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 115995 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||||||||| | ||| ||||| || |||||| Sbjct 115994 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAAC 115939 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||| |||| | ||| |||| || || Sbjct 115938 ATTCAAAAGGAGCCCACTCTTCATCTAGTGTTGAG 115904 >seq2775 Length=875267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || || ||||| || || ||||||||||| || | || Sbjct 378189 AAGATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCC 378248 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || | || ||||| | || || || Sbjct 378249 TCGGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGAC 378308 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| |||| ||||||||||| | ||| ||||| || ||| Sbjct 378309 CAGCAAAGACTGATCTTTGCTTGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 378368 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 378369 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 378406 >seq10000 Length=929206 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 685752 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 685811 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 685812 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 685871 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 685872 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 685931 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 685932 ATCCAGAAAGAGTCGAC 685948 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 685980 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 686039 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 686040 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 686099 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 686100 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 686159 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 686160 ATCCAGAAAGAGTCGAC 686176 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 686208 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 686267 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 686268 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 686327 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 686328 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 686387 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 686388 ATCCAGAAAGAGTCGAC 686404 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 686436 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 686495 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 686496 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 686555 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 686556 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 686615 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 686616 ATCCAGAAAGAGTCGAC 686632 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 686664 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 686723 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 686724 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 686783 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 686784 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 686843 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 686844 ATCCAGAAAGAGTCGAC 686860 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 686892 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 686951 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 686952 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 687011 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 687012 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 687071 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 687072 ATCCAGAAAGAGTCGAC 687088 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 687120 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 687179 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 687180 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 687239 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 687240 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 687299 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 687300 ATCCAGAAAGAGTCGAC 687316 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 687348 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 687407 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 687408 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 687467 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||| | |||||| | ||||||||| Sbjct 687468 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 687527 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 687528 ATCCAGAAAGAGTCGAC 687544 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| | || || || || Sbjct 685521 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCC 685580 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || || ||||| | || || || Sbjct 685581 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 685640 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||||||||| || |||||||| | |||||| | |||||| Sbjct 685641 CAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 685700 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 685701 AACATCCAGAAAGAGTCGAC 685720 >seq5931 Length=560455 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| || || || || |||||||| || || || || Sbjct 199501 AAGATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTGGAGCCC 199442 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || | | Sbjct 199441 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTTAC 199382 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || || || ||||| ||||||||||| | ||| ||||| | | ||| Sbjct 199381 CAGCAAGGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTT-GTCTGCTAC 199323 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| |||| || || Sbjct 199322 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 199285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334560847806932